HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs17206371 chr6:32675147 HLA-DQA2 [-33972bp] C - 12 T vs. C 0.267 (T) 0.383 (T) <1 (-) 35 (-) >0.05
rs9276059 chr6:32695952 HLA-DQA2 [-13167bp] C - 10 C vs. G 0.308 (C) 0.167 (C) <1 (-) 20 (-) >0.05
rs9276060 chr6:32695960 HLA-DQA2 [-13159bp] C - 10 T vs. G 0.317 (G) 0.133 (G) >1 (-) 20 (-) >0.05
rs28893554 chr6:32750504 HLA-DQB2 [+19193bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs12200954 chr6:32723623 HLA-DQB2 [-252bp] C - 12 A vs. G 0.425 (G) 0.233 (A) <1 (-) 26 (-) >0.05
rs28986390 chr6:32753247 HLA-DQB2 [+21936bp] C - 12 A vs. T 0.092 (A) - >1 (-) 0 (-) >0.05
rs9276028 chr6:32695335 HLA-DQA2 [-13784bp] C - 10 A vs. G 0.3 (G) 0.175 (G) >1 (-) 22 (-) >0.05
rs9276312 chr6:32704683 HLA-DQA2 [-4436bp] C - 11 A vs. G 0.292 (A) 0.125 (A) <1 (-) 20 (-) >0.05
rs9275714 chr6:32688273 HLA-DQA2 [-20846bp] C - 12 A vs. G 0.3 (A) 0.142 (A) <1 (-) 14 (-) >0.05
rs17212804 chr6:32675416 HLA-DQA2 [-33703bp] C - 12 T vs. C 0.25 (T) 0.383 (T) <1 (-) 36 (-) >0.05
rs9275831 chr6:32690805 HLA-DQA2 [-18314bp] C - 11 A vs. G 0.308 (A) 0.183 (A) <1 (-) 14 (-) >0.05
rs28371285 chr6:32675929 HLA-DQA2 [-33190bp] C - 12 T vs. C 0.258 (T) 0.267 (T) <1 (-) 36 (-) >0.05
rs7749543 chr6:32751416 HLA-DQB2 [+20105bp] C - 12 A vs. G 0.333 (A) 0.317 (A) <1 (-) 0 (-) >0.05
rs9275841 chr6:32690981 HLA-DQA2 [-18138bp] C - 11 A vs. T 0.375 (T) - >1 (-) 10 (-) >0.05
rs12181270 chr6:32685894 HLA-DQA2 [-23225bp] C - 12 C vs. G 0.35 (C) 0.325 (G) >1 (-) 18 (-) >0.05
rs4285314 chr6:32717702 MIR3135B C - 11 A vs. G 0.425 (A) 0.233 (G) >1 (-) 29 (-) >0.05
rs9275863 chr6:32691476 HLA-DQA2 [-17643bp] C - 11 A vs. T 0.35 (T) - >1 (-) 13 (-) >0.05
rs9276085 chr6:32696676 HLA-DQA2 [-12443bp] C - 10 A vs. T 0.35 (A) 0.158 (A) <1 (-) 22 (-) >0.05
rs7773149 chr6:32706042 HLA-DQA2 [-3077bp] C - 11 A vs. G 0.5 (G) 0.175 (A) <1 (-) 7 (-) >0.05
rs9276086 chr6:32696682 HLA-DQA2 [-12437bp] C - 10 C vs. G - - >1 (-) 23 (-) >0.05
rs9276032 chr6:32695365 HLA-DQA2 [-13754bp] C - 10 A vs. C - - <1 (-) 21 (-) >0.05
rs9275840 chr6:32690978 HLA-DQA2 [-18141bp] C - 11 A vs. T 0.367 (A) - <1 (-) 11 (-) >0.05
rs9276497 chr6:32719027 MIR3135B [+1271bp] C - 11 A vs. G 0.1 (A) - <1 (-) 16 (-) >0.05
rs28371319 chr6:32678795 HLA-DQA2 [-30324bp] C - 12 A vs. T 0.258 (A) 0.383 (A) <1 (-) 40 (-) >0.05
rs9276394 chr6:32708467 HLA-DQA2 [-652bp] C - 11 A vs. T 0.292 (T) 0.117 (T) >1 (-) 17 (-) >0.05
rs28371324 chr6:32679068 HLA-DQA2 [-30051bp] C - 12 T vs. C 0.258 (C) 0.367 (C) >1 (-) 34 (-) >0.05
rs9276090 chr6:32696753 HLA-DQA2 [-12366bp] C - 10 A vs. G 0.358 (A) 0.175 (A) <1 (-) 22 (-) >0.05
rs9276092 chr6:32696755 HLA-DQA2 [-12364bp] C - 10 T vs. C 0.358 (T) 0.175 (T) <1 (-) 22 (-) >0.05
rs9276270 chr6:32702240 HLA-DQA2 [-6879bp] C - 11 C vs. G - - <1 (-) 11 (-) >0.05
rs9276259 chr6:32701898 HLA-DQA2 [-7221bp] C - 11 C vs. G - - >1 (-) 2 (-) >0.05
rs9276713 chr6:32759771 HLA-DOB [-20769bp] C - 12 A vs. G 0.075 (A) - >1 (-) 0 (-) >0.05
rs2157078 chr6:32762226 HLA-DOB [-18314bp] C - 12 A vs. G 0.433 (A) 0.25 (A) <1 (-) 11 (-) >0.05
rs9276318 chr6:32704982 HLA-DQA2 [-4137bp] C - 11 A vs. C 0.3 (A) 0.125 (A) <1 (-) 23 (-) >0.05
rs9276319 chr6:32705002 HLA-DQA2 [-4117bp] C - 11 T vs. C 0.3 (C) 0.125 (C) >1 (-) 23 (-) >0.05
rs9276083 chr6:32696644 HLA-DQA2 [-12475bp] C - 10 T vs. C - - <1 (-) 20 (-) >0.05
rs9276377 chr6:32707636 HLA-DQA2 [-1483bp] C - 11 A vs. C 0.5 (A) 0.167 (C) >1 (-) 6 (-) >0.05
rs9275835 chr6:32690889 HLA-DQA2 [-18230bp] C - 11 A vs. T 0.3 (T) - >1 (-) 12 (-) >0.05
rs9276337 chr6:32705623 HLA-DQA2 [-3496bp] C - 11 T vs. C - - >1 (-) 14 (-) >0.05
rs5029394 chr6:32695082 HLA-DQA2 [-14037bp] C - 10 A vs. G 0.3 (A) 0.158 (A) <1 (-) 21 (-) >0.05
rs9275820 chr6:32690572 HLA-DQA2 [-18547bp] C - 11 A vs. G 0.342 (A) 0.15 (A) <1 (-) 12 (-) >0.05
rs9275833 chr6:32690838 HLA-DQA2 [-18281bp] C - 11 T vs. G 0.325 (G) 0.175 (G) >1 (-) 15 (-) >0.05
rs4351241 chr6:32717549 MIR3135B [-140bp] C - 11 T vs. C 0.417 (C) 0.233 (T) <1 (-) 30 (-) >0.05
rs9275765 chr6:32689324 HLA-DQA2 [-19795bp] C - 12 A vs. T 0.3 (A) 0.158 (A) <1 (-) 8 (-) >0.05
rs2857154 chr6:32762616 HLA-DOB [-17924bp] C - 12 A vs. G 0.392 (A) 0.25 (A) <1 (-) 13 (-) >0.05
rs11759565 chr6:32717946 MIR3135B [+190bp] C - 11 A vs. G 0.425 (A) 0.233 (G) >1 (-) 30 (-) >0.05
rs7744593 chr6:32704326 HLA-DQA2 [-4793bp] C - 11 A vs. T 0.292 (A) 0.125 (A) <1 (-) 23 (-) >0.05
rs9275830 chr6:32690789 HLA-DQA2 [-18330bp] C - 11 A vs. G 0.3 (A) 0.158 (A) <1 (-) 14 (-) >0.05
rs9276298 chr6:32703021 HLA-DQA2 [-6098bp] C - 11 A vs. G 0.292 (G) 0.142 (G) >1 (-) 23 (-) >0.05
rs2647084 chr6:32679779 HLA-DQA2 [-29340bp] C - 12 A vs. T 0.258 (T) 0.367 (T) >1 (-) 34 (-) >0.05
rs28986389 chr6:32753205 HLA-DQB2 [+21894bp] C - 12 A vs. T 0.092 (T) - <1 (-) 0 (-) >0.05

Association studies for this region [+]