HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276049 chr6:32695740 HLA-DQA2 [-13379bp] C - 10 A vs. G 0.3 (G) 0.158 (G) >1 (-) 19 (-) >0.05
rs9276050 chr6:32695761 HLA-DQA2 [-13358bp] C - 10 C vs. G 0.3 (G) 0.158 (G) >1 (-) 19 (-) >0.05
rs2859062 chr6:32693041 HLA-DQA2 [-16078bp] C - 11 A vs. G 0.342 (A) 0.342 (G) >1 (-) 15 (-) >0.05
rs7769959 chr6:32723486 HLA-DQB2 [-389bp] C - 12 C vs. G 0.425 (C) 0.242 (G) >1 (-) 28 (-) >0.05
rs5029393 chr6:32695168 HLA-DQA2 [-13951bp] C - 10 A vs. G 0.3 (G) 0.175 (G) >1 (-) 21 (-) >0.05
rs28986382 chr6:32752431 HLA-DQB2 [+21120bp] C - 12 A vs. T 0.092 (T) - <1 (-) 0 (-) >0.05
rs28986383 chr6:32752436 HLA-DQB2 [+21125bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs28986403 chr6:32754869 HLA-DQB2 [+23558bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs28986381 chr6:32752429 HLA-DQB2 [+21118bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs28986398 chr6:32754516 HLA-DQB2 [+23205bp] C - 12 A vs. G 0.092 (A) 0.008 (A) >1 (-) 0 (-) >0.05
rs9276040 chr6:32695521 HLA-DQA2 [-13598bp] C - 10 T vs. C 0.308 (T) 0.158 (T) <1 (-) 20 (-) >0.05
rs28893551 chr6:32750369 HLA-DQB2 [+19058bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs2857150 chr6:32763821 HLA-DOB [-16719bp] C - 12 A vs. G 0.392 (A) 0.25 (A) <1 (-) 17 (-) >0.05
rs2071798 chr6:32714592 HLA-DQA2 C - 11 A vs. G 0.408 (A) 0.233 (G) >1 (-) 27 (-) >0.05
rs9276302 chr6:32703206 HLA-DQA2 [-5913bp] C - 11 A vs. G 0.3 (A) 0.142 (A) <1 (-) 23 (-) >0.05
rs9276065 chr6:32696160 HLA-DQA2 [-12959bp] C - 10 T vs. C 0.3 (C) - >1 (-) 18 (-) >0.05
rs28755385 chr6:32676425 HLA-DQA2 [-32694bp] C - 12 T vs. C 0.275 (T) 0.383 (T) <1 (-) 35 (-) >0.05
rs7760514 chr6:32746309 HLA-DQB2 [+14998bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs10947340 chr6:32718387 MIR3135B [+631bp] C - 11 T vs. G 0.425 (T) 0.233 (G) >1 (-) 29 (-) >0.05
rs9276015 chr6:32694759 HLA-DQA2 [-14360bp] C - 10 C vs. G 0.3 (C) 0.158 (C) <1 (-) 21 (-) >0.05
rs9275819 chr6:32690565 HLA-DQA2 [-18554bp] C - 11 T vs. G 0.325 (G) - >1 (-) 12 (-) >0.05
rs9276018 chr6:32695028 HLA-DQA2 [-14091bp] C - 9 A vs. G 0.2 (A) - >1 (-) 0 (-) >0.05
rs9276281 chr6:32702546 HLA-DQA2 [-6573bp] C - 11 A vs. G 0.292 (G) 0.158 (G) >1 (-) 11 (-) >0.05
rs9276264 chr6:32701981 HLA-DQA2 [-7138bp] C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs9275821 chr6:32690634 HLA-DQA2 [-18485bp] C - 11 A vs. G 0.367 (A) 0.15 (A) <1 (-) 8 (-) >0.05
rs9275822 chr6:32690637 HLA-DQA2 [-18482bp] C - 11 C vs. G 0.367 (C) 0.15 (C) <1 (-) 8 (-) >0.05
rs9276041 chr6:32695603 HLA-DQA2 [-13516bp] C - 10 T vs. C 0.308 (T) 0.158 (T) <1 (-) 19 (-) >0.05
rs28755386 chr6:32676484 HLA-DQA2 [-32635bp] C - 12 A vs. C 0.275 (A) 0.383 (A) <1 (-) 37 (-) >0.05
rs9275601 chr6:32682664 HLA-DQA2 [-26455bp] C - 8 T vs. C 0.383 (T) 0.408 (T) <1 (-) 0 (-) >0.05
rs28755387 chr6:32676488 HLA-DQA2 [-32631bp] C - 12 A vs. C 0.267 (C) 0.383 (C) >1 (-) 37 (-) >0.05
rs28893549 chr6:32750346 HLA-DQB2 [+19035bp] C - 12 A vs. C 0.083 (A) - >1 (-) 0 (-) >0.05
rs28893550 chr6:32750348 HLA-DQB2 [+19037bp] C - 12 A vs. T 0.083 (A) - >1 (-) 0 (-) >0.05
rs9276279 chr6:32702498 HLA-DQA2 [-6621bp] C - 11 T vs. C 0.3 (C) 0.125 (C) >1 (-) 19 (-) >0.05
rs117160199 chr6:32707371 HLA-DQA2 [-1748bp] C - 8 A vs. G - 0.05 (A) >1 (-) 0 (-) >0.05
rs3957217 chr6:32678509 HLA-DQA2 [-30610bp] C - 12 A vs. G 0.258 (G) 0.4 (G) >1 (-) 34 (-) >0.05
rs12183091 chr6:32685999 HLA-DQA2 [-23120bp] C - 12 A vs. T 0.35 (T) 0.325 (A) <1 (-) 16 (-) >0.05
rs28371295 chr6:32677129 HLA-DQA2 [-31990bp] C - 12 A vs. T 0.267 (T) 0.392 (T) >1 (-) 34 (-) >0.05
rs117921525 chr6:32672734 HLA-DQA2 [-36385bp] C - 5 A vs. C - 0.108 (A) >1 (-) 0 (-) >0.05
rs9276047 chr6:32695698 HLA-DQA2 [-13421bp] C - 10 A vs. G - - <1 (-) 20 (-) >0.05
rs28371294 chr6:32677124 HLA-DQA2 [-31995bp] C - 12 A vs. T 0.267 (A) 0.383 (A) <1 (-) 34 (-) >0.05
rs9276044 chr6:32695637 HLA-DQA2 [-13482bp] C - 10 T vs. G 0.317 (T) 0.158 (T) <1 (-) 22 (-) >0.05
rs28371290 chr6:32676125 HLA-DQA2 [-32994bp] C - 12 T vs. C 0.242 (T) 0.25 (T) <1 (-) 36 (-) >0.05
rs28772343 chr6:32693985 HLA-DQA2 [-15134bp] C - 8 T vs. C - - <1 (-) 27 (-) >0.05
rs9276267 chr6:32702067 HLA-DQA2 [-7052bp] C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs9276025 chr6:32695287 HLA-DQA2 [-13832bp] C - 10 A vs. G 0.308 (A) 0.175 (A) <1 (-) 21 (-) >0.05
rs9276048 chr6:32695700 HLA-DQA2 [-13419bp] C - 10 T vs. C - - <1 (-) 19 (-) >0.05
rs12663979 chr6:32753654 HLA-DQB2 [+22343bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs28371312 chr6:32678306 HLA-DQA2 [-30813bp] C - 12 T vs. C 0.267 (T) 0.367 (T) <1 (-) 31 (-) >0.05
rs28371322 chr6:32679047 HLA-DQA2 [-30072bp] C - 12 A vs. G 0.25 (A) 0.383 (A) <1 (-) 34 (-) >0.05
rs28371313 chr6:32678309 HLA-DQA2 [-30810bp] C - 12 T vs. C 0.258 (T) 0.383 (T) <1 (-) 31 (-) >0.05

Association studies for this region [+]