HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs11758312 chr6:32716372 MIR3135B [-1317bp] C - 11 A vs. C 0.425 (A) 0.233 (C) >1 (-) 29 (-) >0.05
rs28986386 chr6:32753145 HLA-DQB2 [+21834bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs6936707 chr6:32684069 HLA-DQA2 [-25050bp] C - 6 T vs. C - 0.058 (T) >1 (-) 0 (-) >0.05
rs9276034 chr6:32695394 HLA-DQA2 [-13725bp] C - 10 A vs. T 0.317 (A) 0.125 (A) <1 (-) 20 (-) >0.05
rs2858884 chr6:32700083 HLA-DQA2 [-9036bp] C - 11 A vs. C 0.2 (C) 0.075 (C) <1 (-) 0 (-) >0.05
rs9275929 chr6:32692838 HLA-DQA2 [-16281bp] C - 11 A vs. G 0.325 (G) 0.167 (G) >1 (-) 14 (-) >0.05
rs9275930 chr6:32692842 HLA-DQA2 [-16277bp] C - 11 A vs. T 0.317 (T) 0.158 (T) >1 (-) 14 (-) >0.05
rs9276362 chr6:32707018 HLA-DQA2 [-2101bp] C - 11 T vs. C 0.5 (T) 0.183 (T) <1 (-) 6 (-) >0.05
rs9275849 chr6:32691174 HLA-DQA2 [-17945bp] C - 11 A vs. T 0.325 (A) 0.158 (A) <1 (-) 12 (-) >0.05
rs116189954 chr6:32685332 HLA-DQA2 [-23787bp] C - 9 T vs. C - - <1 (-) 9 (-) >0.05
rs6915986 chr6:32683898 HLA-DQA2 [-25221bp] C - 6 T vs. C - 0.058 (C) <1 (-) 0 (-) >0.05
rs28371289 chr6:32676075 HLA-DQA2 [-33044bp] C - 12 A vs. G 0.258 (G) 0.358 (G) >1 (-) 35 (-) >0.05
rs28986392 chr6:32754322 HLA-DQB2 [+23011bp] C - 12 A vs. T 0.083 (T) - <1 (-) 0 (-) >0.05
rs28986393 chr6:32754340 HLA-DQB2 [+23029bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs9275957 chr6:32693294 HLA-DQA2 [-15825bp] C - 10 A vs. G 0.175 (A) - >1 (-) 0 (-) >0.05
rs28986394 chr6:32754342 HLA-DQB2 [+23031bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs9275806 chr6:32690320 HLA-DQA2 [-18799bp] C - 11 C vs. G 0.2 (C) 0.092 (C) >1 (-) 0 (-) >0.05
rs4496840 chr6:32709990 HLA-DQA2 C - 11 T vs. C 0.35 (T) 0.083 (T) <1 (-) 0 (-) >0.05
rs9276597 chr6:32733944 HLA-DQB2 [+2633bp] C - 12 A vs. G 0.417 (G) 0.25 (A) >1 (-) 20 (-) >0.05
rs9276330 chr6:32705492 HLA-DQA2 [-3627bp] C - 11 T vs. C 0.158 (T) - <1 (-) 0 (-) >0.05
rs9276329 chr6:32705489 HLA-DQA2 [-3630bp] C - 11 T vs. C 0.15 (C) - >1 (-) 0 (-) >0.05
rs9276498 chr6:32719081 MIR3135B [+1325bp] C - 11 A vs. G 0.183 (A) 0.075 (A) <1 (-) 17 (-) >0.05
rs7450522 chr6:32708118 HLA-DQA2 [-1001bp] C - 11 T vs. C - - <1 (-) 20 (-) >0.05
rs9276035 chr6:32695401 HLA-DQA2 [-13718bp] C - 10 C vs. G 0.308 (C) 0.15 (C) <1 (-) 20 (-) >0.05
rs9276706 chr6:32756872 HLA-DOB [-23668bp] C - 12 A vs. T 0.392 (T) - >1 (-) 2 (-) >0.05
rs9276707 chr6:32756874 HLA-DOB [-23666bp] C - 12 A vs. T 0.4 (T) - >1 (-) 2 (-) >0.05
rs9275944 chr6:32693079 HLA-DQA2 [-16040bp] C - 11 A vs. G 0.317 (A) 0.158 (A) <1 (-) 9 (-) >0.05
rs9276323 chr6:32705110 HLA-DQA2 [-4009bp] C - 11 A vs. C 0.167 (A) - <1 (-) 0 (-) >0.05
rs9276172 chr6:32698947 HLA-DQA2 [-10172bp] C - 11 C vs. G 0.2 (C) 0.075 (C) >1 (-) 0 (-) >0.05
rs9276611 chr6:32742592 HLA-DQB2 [+11281bp] C - 12 A vs. G 0.267 (G) 0.267 (G) >1 (-) 0 (-) >0.05
rs9276024 chr6:32695264 HLA-DQA2 [-13855bp] C - 10 T vs. C 0.325 (T) 0.175 (T) <1 (-) 20 (-) >0.05
rs1480382 chr6:32740895 HLA-DQB2 [+9584bp] C - 12 T vs. C 0.258 (T) 0.325 (T) <1 (-) 0 (-) >0.05
rs33998906 chr6:32733628 HLA-DQB2 [+2317bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs9275963 chr6:32693417 HLA-DQA2 [-15702bp] C - 11 T vs. G 0.333 (T) 0.15 (T) <1 (-) 14 (-) >0.05
rs9275763 chr6:32689286 HLA-DQA2 [-19833bp] C - 12 T vs. C 0.35 (T) 0.158 (T) <1 (-) 11 (-) >0.05
rs9276080 chr6:32696591 HLA-DQA2 [-12528bp] C - 10 A vs. C - - <1 (-) 21 (-) >0.05
rs3948793 chr6:32759448 HLA-DOB [-21092bp] C - 12 A vs. G 0.267 (A) 0.317 (A) <1 (-) 0 (-) >0.05
rs9276221 chr6:32700410 HLA-DQA2 [-8709bp] C - 11 T vs. C - - <1 (-) 0 (-) >0.05
rs28380312 chr6:32686525 HLA-DQA2 [-22594bp] C - 12 A vs. G 0.325 (G) 0.35 (A) <1 (-) 14 (-) >0.05
rs6934041 chr6:32722767 HLA-DQB2 [-1108bp] C - 12 C vs. G 0.433 (G) 0.142 (C) <1 (-) 24 (-) >0.05
rs9276076 chr6:32696550 HLA-DQA2 [-12569bp] C - 10 A vs. G 0.3 (A) 0.158 (A) <1 (-) 20 (-) >0.05
rs9276081 chr6:32696630 HLA-DQA2 [-12489bp] C - 10 T vs. C 0.383 (C) - >1 (-) 21 (-) >0.05
rs9275808 chr6:32690347 HLA-DQA2 [-18772bp] C - 11 C vs. G 0.325 (G) 0.15 (G) >1 (-) 8 (-) >0.05
rs9276029 chr6:32695336 HLA-DQA2 [-13783bp] C - 9 A vs. G 0.2 (A) - >1 (-) 0 (-) >0.05
rs9276132 chr6:32697755 HLA-DQA2 [-11364bp] C - 11 A vs. G 0.208 (G) 0.075 (G) <1 (-) 0 (-) >0.05
rs9276213 chr6:32700009 HLA-DQA2 [-9110bp] C - 11 T vs. G 0.15 (T) 0.042 (T) <1 (-) 0 (-) >0.05
rs9276082 chr6:32696631 HLA-DQA2 [-12488bp] C - 10 A vs. G - - <1 (-) 21 (-) >0.05
rs9276226 chr6:32700659 HLA-DQA2 [-8460bp] C - 11 A vs. G 0.158 (A) 0.033 (A) <1 (-) 0 (-) >0.05
rs9276164 chr6:32698468 HLA-DQA2 [-10651bp] C - 11 T vs. C 0.2 (T) 0.067 (T) >1 (-) 0 (-) >0.05
rs9501203 chr6:32746329 HLA-DQB2 [+15018bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05

Association studies for this region [+]