HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region
Append your own data and create meta-analysis

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275807 chr6:32690332 HLA-DQA2 [-18787bp] C - 11 A vs. T 0.192 (T) 0.092 (T) <1 (-) 0 (-) >0.05
rs9276149 chr6:32698156 HLA-DQA2 [-10963bp] C - 11 T vs. C 0.2 (T) 0.075 (T) >1 (-) 0 (-) >0.05
rs9275986 chr6:32694068 HLA-DQA2 [-15051bp] C - 10 A vs. G 0.2 (G) 0.083 (G) <1 (-) 0 (-) >0.05
rs28420297 chr6:32714760 HLA-DQA2 C - 11 A vs. G 0.425 (G) 0.233 (A) <1 (-) 28 (-) >0.05
rs28693951 chr6:32714732 HLA-DQA2 C - 11 T vs. C 0.425 (T) 0.233 (C) >1 (-) 28 (-) >0.05
rs9275896 chr6:32692060 HLA-DQA2 [-17059bp] C - 11 A vs. G 0.308 (A) 0.158 (A) <1 (-) 14 (-) >0.05
rs9276193 chr6:32699532 HLA-DQA2 [-9587bp] C - 11 A vs. T 0.15 (A) 0.1 (A) <1 (-) 0 (-) >0.05
rs9276612 chr6:32742712 HLA-DQB2 [+11401bp] C - 12 A vs. G 0.258 (A) 0.275 (A) <1 (-) 0 (-) >0.05
rs9276397 chr6:32708774 HLA-DQA2 [-345bp] C - 11 A vs. G 0.308 (A) 0.117 (A) <1 (-) 17 (-) >0.05
rs2859090 chr6:32700833 HLA-DQA2 [-8286bp] C - 11 A vs. G 0.2 (A) 0.075 (A) >1 (-) 0 (-) >0.05
rs2213574 chr6:32715837 HLA-DQA2 [+845bp] C - 11 A vs. G 0.425 (A) 0.233 (G) >1 (-) 29 (-) >0.05
rs9276268 chr6:32702080 HLA-DQA2 [-7039bp] C - 11 A vs. G - - >1 (-) 0 (-) >0.05
rs9276370 chr6:32707295 HLA-DQA2 [-1824bp] C - 11 T vs. G 0.458 (T) 0.167 (G) >1 (-) 6 (-) >0.05
rs9275945 chr6:32693085 HLA-DQA2 [-16034bp] C - 10 A vs. G 0.175 (G) 0.092 (G) <1 (-) 0 (-) >0.05
rs2067577 chr6:32762484 HLA-DOB [-18056bp] C - 12 C vs. G 0.392 (C) 0.25 (C) <1 (-) 13 (-) >0.05
rs9275855 chr6:32691266 HLA-DQA2 [-17853bp] C - 11 T vs. C 0.3 (T) 0.192 (T) <1 (-) 12 (-) >0.05
rs9276017 chr6:32695022 HLA-DQA2 [-14097bp] C - 10 T vs. C 0.308 (T) 0.158 (T) <1 (-) 20 (-) >0.05
rs9276711 chr6:32757297 HLA-DOB [-23243bp] C - 12 T vs. C 0.267 (T) 0.3 (T) <1 (-) 0 (-) >0.05
rs2858888 chr6:32694472 HLA-DQA2 [-14647bp] C - 11 T vs. G 0.35 (G) 0.333 (T) <1 (-) 18 (-) >0.05
rs9276023 chr6:32695256 HLA-DQA2 [-13863bp] C - 10 A vs. G 0.317 (A) 0.175 (A) <1 (-) 21 (-) >0.05
rs9276079 chr6:32696584 HLA-DQA2 [-12535bp] C - 10 T vs. C - - <1 (-) 21 (-) >0.05
rs9275867 chr6:32691526 HLA-DQA2 [-17593bp] C - 11 A vs. T 0.367 (T) 0.183 (T) >1 (-) 11 (-) >0.05
rs114295358 chr6:32722492 HLA-DQB2 [-1383bp] C - 3 T vs. G - - >1 (-) 0 (-) >0.05
rs13203859 chr6:32752492 HLA-DQB2 [+21181bp] C - 12 A vs. G 0.1 (A) - >1 (-) 0 (-) >0.05
rs9276003 chr6:32694550 HLA-DQA2 [-14569bp] C - 10 A vs. G 0.333 (A) 0.175 (A) <1 (-) 19 (-) >0.05
rs9276005 chr6:32694567 HLA-DQA2 [-14552bp] C - 10 T vs. C 0.308 (T) 0.175 (T) <1 (-) 17 (-) >0.05
rs2859067 chr6:32703974 HLA-DQA2 [-5145bp] C - 8 T vs. C - 0.058 (T) >1 (-) 0 (-) >0.05
rs2859073 chr6:32703250 HLA-DQA2 [-5869bp] C - 8 A vs. G - - <1 (-) 0 (-) >0.05
rs9276045 chr6:32695640 HLA-DQA2 [-13479bp] C - 10 C vs. G 0.308 (G) 0.158 (G) >1 (-) 22 (-) >0.05
rs2067098 chr6:32762307 HLA-DOB [-18233bp] C - 12 T vs. C 0.392 (T) 0.258 (T) <1 (-) 10 (-) >0.05
rs9275823 chr6:32690657 HLA-DQA2 [-18462bp] C - 11 T vs. C 0.167 (C) - <1 (-) 0 (-) >0.05
rs28986405 chr6:32754949 HLA-DQB2 [+23638bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs9276007 chr6:32694604 HLA-DQA2 [-14515bp] C - 10 A vs. G 0.308 (A) 0.167 (A) <1 (-) 16 (-) >0.05
rs9276678 chr6:32750082 HLA-DQB2 [+18771bp] C - 12 T vs. C - - <1 (-) 19 (-) >0.05
rs9275772 chr6:32689503 HLA-DQA2 [-19616bp] C - 12 T vs. C 0.3 (T) 0.158 (T) <1 (-) 8 (-) >0.05
rs2857155 chr6:32761317 HLA-DOB [-19223bp] C - 12 A vs. G 0.425 (A) 0.258 (A) <1 (-) 17 (-) >0.05
rs9276006 chr6:32694582 HLA-DQA2 [-14537bp] C - 10 C vs. G 0.3 (G) 0.175 (G) >1 (-) 17 (-) >0.05
rs9276227 chr6:32700684 HLA-DQA2 [-8435bp] C - 11 T vs. C 0.158 (T) 0.042 (T) <1 (-) 0 (-) >0.05
rs9275889 chr6:32691919 HLA-DQA2 [-17200bp] C - 11 A vs. G 0.3 (A) 0.167 (A) <1 (-) 12 (-) >0.05
rs9275887 chr6:32691905 HLA-DQA2 [-17214bp] C - 11 T vs. C 0.3 (C) 0.167 (C) >1 (-) 12 (-) >0.05
rs9276122 chr6:32697382 HLA-DQA2 [-11737bp] C - 11 T vs. C 0.308 (T) 0.15 (T) <1 (-) 24 (-) >0.05
rs2187686 chr6:32761507 HLA-DOB [-19033bp] C - 12 A vs. G 0.392 (A) 0.25 (A) <1 (-) 10 (-) >0.05
rs9275856 chr6:32691279 HLA-DQA2 [-17840bp] C - 11 A vs. C 0.308 (A) 0.192 (A) <1 (-) 12 (-) >0.05
rs5016066 chr6:32718818 MIR3135B [+1062bp] C - 11 A vs. C 0.408 (C) 0.25 (A) <1 (-) 32 (-) >0.05
rs9275809 chr6:32690357 HLA-DQA2 [-18762bp] C - 11 C vs. G 0.325 (C) - <1 (-) 8 (-) >0.05
rs9276004 chr6:32694564 HLA-DQA2 [-14555bp] C - 10 T vs. C 0.3 (C) 0.175 (C) >1 (-) 17 (-) >0.05
rs9276316 chr6:32704943 HLA-DQA2 [-4176bp] C - 11 A vs. G 0.5 (A) 0.167 (A) <1 (-) 7 (-) >0.05
rs9276317 chr6:32704977 HLA-DQA2 [-4142bp] C - 11 T vs. C 0.492 (T) 0.175 (C) >1 (-) 7 (-) >0.05
rs28986353 chr6:32750777 HLA-DQB2 [+19466bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs9275971 chr6:32693681 HLA-DQA2 [-15438bp] C - 11 A vs. G 0.3 (A) 0.167 (A) <1 (-) 13 (-) >0.05

Association studies for this region [+]