HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7770024 chr6:32723341 HLA-DQB2 [-534bp] C - 12 A vs. G 0.425 (G) 0.233 (A) <1 (-) 27 (-) >0.05
rs5001627 chr6:32723211 HLA-DQB2 [-664bp] C - 12 A vs. C 0.425 (A) 0.233 (C) >1 (-) 27 (-) >0.05
rs5001628 chr6:32723196 HLA-DQB2 [-679bp] C - 12 A vs. C 0.425 (C) 0.242 (A) <1 (-) 27 (-) >0.05
rs117176906 chr6:32688471 HLA-DQA2 [-20648bp] C - 5 A vs. C - 0.058 (C) <1 (-) 0 (-) >0.05
rs5001634 chr6:32722949 HLA-DQB2 [-926bp] C - 12 T vs. C 0.417 (C) 0.233 (T) <1 (-) 27 (-) >0.05
rs9275999 chr6:32694452 HLA-DQA2 [-14667bp] C - 10 T vs. C 0.3 (C) 0.167 (C) >1 (-) 20 (-) >0.05
rs9276624 chr6:32743652 HLA-DQB2 [+12341bp] C - 12 A vs. G 0.35 (G) 0.233 (G) >1 (-) 9 (-) >0.05
rs9276658 chr6:32746731 HLA-DQB2 [+15420bp] C - 12 A vs. G - - <1 (-) 24 (-) >0.05
rs117457996 chr6:32741857 HLA-DQB2 [+10546bp] C - 9 T vs. C - 0.058 (C) <1 (-) 0 (-) >0.05
rs7382794 chr6:32734030 HLA-DQB2 [+2719bp] C - 12 T vs. C 0.425 (C) 0.333 (T) >1 (-) 31 (-) >0.05
rs7769979 chr6:32723572 HLA-DQB2 [-303bp] C - 12 A vs. G 0.425 (A) 0.233 (G) >1 (-) 27 (-) >0.05
rs9276197 chr6:32699587 HLA-DQA2 [-9532bp] C - 11 T vs. C 0.5 (C) 0.175 (T) <1 (-) 6 (-) >0.05
rs9275962 chr6:32693404 HLA-DQA2 [-15715bp] C - 11 C vs. G - - >1 (-) 12 (-) >0.05
rs9276314 chr6:32704786 HLA-DQA2 [-4333bp] C - 11 T vs. G 0.2 (T) - >1 (-) 0 (-) >0.05
rs9276720 chr6:32761939 HLA-DOB [-18601bp] C - 12 C vs. G 0.092 (G) 0.008 (G) <1 (-) 0 (-) >0.05
rs9276327 chr6:32705401 HLA-DQA2 [-3718bp] C - 11 A vs. T 0.2 (T) 0.017 (T) <1 (-) 0 (-) >0.05
rs9275993 chr6:32694295 HLA-DQA2 [-14824bp] C - 10 T vs. C 0.375 (T) 0.167 (T) <1 (-) 17 (-) >0.05
rs9275994 chr6:32694296 HLA-DQA2 [-14823bp] C - 10 T vs. C 0.367 (T) 0.167 (T) <1 (-) 17 (-) >0.05
rs28772315 chr6:32686738 HLA-DQA2 [-22381bp] C - 12 A vs. G 0.333 (A) 0.367 (G) >1 (-) 14 (-) >0.05
rs6457646 chr6:32724143 HLA-DQB2 C - 12 A vs. G 0.425 (A) 0.233 (G) >1 (-) 28 (-) >0.05
rs6902723 chr6:32731960 HLA-DQB2 [+649bp] C - 12 A vs. G 0.425 (A) 0.333 (G) <1 (-) 31 (-) >0.05
rs9276001 chr6:32694520 HLA-DQA2 [-14599bp] C - 10 T vs. G 0.308 (T) 0.175 (T) <1 (-) 19 (-) >0.05
rs9276000 chr6:32694519 HLA-DQA2 [-14600bp] C - 10 A vs. G 0.325 (A) 0.175 (A) <1 (-) 19 (-) >0.05
rs5001633 chr6:32723085 HLA-DQB2 [-790bp] C - 12 T vs. C 0.425 (C) 0.242 (T) <1 (-) 27 (-) >0.05
rs9276379 chr6:32707641 HLA-DQA2 [-1478bp] C - 11 A vs. C 0.15 (A) - <1 (-) 0 (-) >0.05
rs9469228 chr6:32687890 HLA-DQA2 [-21229bp] C - 12 A vs. G 0.35 (G) 0.35 (A) <1 (-) 12 (-) >0.05
rs9275919 chr6:32692587 HLA-DQA2 [-16532bp] C - 11 T vs. C 0.358 (T) 0.167 (T) <1 (-) 9 (-) >0.05
rs9276378 chr6:32707638 HLA-DQA2 [-1481bp] C - 11 T vs. C 0.15 (T) - <1 (-) 0 (-) >0.05
rs9276150 chr6:32698212 HLA-DQA2 [-10907bp] C - 11 A vs. C 0.492 (A) 0.225 (C) >1 (-) 8 (-) >0.05
rs9275920 chr6:32692588 HLA-DQA2 [-16531bp] C - 11 A vs. G 0.325 (G) 0.167 (G) >1 (-) 9 (-) >0.05
rs9276358 chr6:32706725 HLA-DQA2 [-2394bp] C - 11 A vs. G 0.192 (G) - <1 (-) 0 (-) >0.05
rs7381625 chr6:32734169 HLA-DQB2 [+2858bp] C - 12 T vs. C 0.425 (T) 0.333 (C) <1 (-) 30 (-) >0.05
rs9275976 chr6:32693847 HLA-DQA2 [-15272bp] C - 10 A vs. G 0.317 (G) 0.167 (G) >1 (-) 15 (-) >0.05
rs9275977 chr6:32693850 HLA-DQA2 [-15269bp] C - 10 A vs. T 0.3 (A) 0.167 (A) <1 (-) 15 (-) >0.05
rs9501201 chr6:32746264 HLA-DQB2 [+14953bp] C - 12 T vs. G - - >1 (-) 0 (-) >0.05
rs73732612 chr6:32695202 HLA-DQA2 [-13917bp] C - 3 T vs. C - - >1 (-) 0 (-) >0.05
rs2621413 chr6:32742531 HLA-DQB2 [+11220bp] C - 12 T vs. G 0.35 (G) 0.292 (G) >1 (-) 10 (-) >0.05
rs9276325 chr6:32705210 HLA-DQA2 [-3909bp] C - 11 T vs. G 0.2 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs62403978 chr6:32683705 HLA-DQA2 [-25414bp] C - 9 T vs. C - - <1 (-) 0 (-) >0.05
rs7747423 chr6:32698570 HLA-DQA2 [-10549bp] C - 11 A vs. G 0.5 (A) 0.233 (G) >1 (-) 8 (-) >0.05
rs2859081 chr6:32702108 HLA-DQA2 [-7011bp] C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs6903130 chr6:32732210 HLA-DQB2 [+899bp] C - 12 A vs. G 0.425 (A) 0.333 (G) <1 (-) 31 (-) >0.05
rs73732611 chr6:32695075 HLA-DQA2 [-14044bp] C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs12177980 chr6:32686084 HLA-DQA2 [-23035bp] C - 12 A vs. G 0.35 (A) 0.325 (G) >1 (-) 15 (-) >0.05
rs9275946 chr6:32693090 HLA-DQA2 [-16029bp] C - 11 T vs. C 0.333 (C) 0.158 (C) >1 (-) 4 (-) >0.05
rs9276396 chr6:32708736 HLA-DQA2 [-383bp] C - 11 T vs. C 0.292 (T) 0.117 (T) <1 (-) 19 (-) >0.05
rs9276249 chr6:32701372 HLA-DQA2 [-7747bp] C - 11 A vs. C - - >1 (-) 0 (-) >0.05
rs28772314 chr6:32686688 HLA-DQA2 [-22431bp] C - 12 A vs. G 0.35 (A) - >1 (-) 16 (-) >0.05
rs2647083 chr6:32679722 HLA-DQA2 [-29397bp] C - 12 C vs. G 0.258 (G) 0.367 (G) >1 (-) 33 (-) >0.05
rs9276644 chr6:32745043 HLA-DQB2 [+13732bp] C - 12 T vs. C 0.267 (C) 0.258 (C) >1 (-) 0 (-) >0.05

Association studies for this region [+]