HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276401 chr6:32709204 HLA-DQA2 C - 11 C vs. G 0.2 (C) - >1 (-) 0 (-) >0.05
rs28986352 chr6:32750656 HLA-DQB2 [+19345bp] C - 12 A vs. G 0.083 (G) - >1 (-) 0 (-) >0.05
rs28986351 chr6:32750650 HLA-DQB2 [+19339bp] C - 12 T vs. C 0.083 (T) - <1 (-) 0 (-) >0.05
rs5001631 chr6:32723109 HLA-DQB2 [-766bp] C - 12 C vs. G 0.408 (C) 0.242 (G) >1 (-) 29 (-) >0.05
rs2857159 chr6:32760257 HLA-DOB [-20283bp] C - 12 T vs. C 0.425 (T) 0.258 (T) <1 (-) 12 (-) >0.05
rs2857160 chr6:32760249 HLA-DOB [-20291bp] C - 12 T vs. G 0.408 (T) 0.258 (T) <1 (-) 12 (-) >0.05
rs7774443 chr6:32721961 HLA-DQB2 [-1914bp] C - 12 T vs. C 0.425 (T) 0.233 (C) >1 (-) 24 (-) >0.05
rs9276723 chr6:32763405 HLA-DOB [-17135bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs7774435 chr6:32721948 HLA-DQB2 [-1927bp] C - 12 T vs. C 0.417 (T) 0.233 (C) >1 (-) 24 (-) >0.05
rs9276714 chr6:32760318 HLA-DOB [-20222bp] C - 11 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs28772279 chr6:32673754 HLA-DQA2 [-35365bp] C - 12 A vs. C - - <1 (-) 4 (-) >0.05
rs5021453 chr6:32708124 HLA-DQA2 [-995bp] C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs9276424 chr6:32710935 HLA-DQA2 C - 11 T vs. C - - >1 (-) 29 (-) >0.05
rs2187685 chr6:32764315 HLA-DOB [-16225bp] C - 12 T vs. C 0.483 (T) 0.258 (T) <1 (-) 20 (-) >0.05
rs2621379 chr6:32762792 HLA-DOB [-17748bp] C - 12 A vs. G 0.483 (G) 0.258 (G) >1 (-) 17 (-) >0.05
rs5001632 chr6:32723097 HLA-DQB2 [-778bp] C - 12 A vs. C 0.417 (A) 0.242 (C) >1 (-) 28 (-) >0.05
rs2857153 chr6:32762641 HLA-DOB [-17899bp] C - 12 T vs. C 0.483 (C) 0.258 (C) >1 (-) 17 (-) >0.05
rs9276628 chr6:32743861 HLA-DQB2 [+12550bp] C - 12 A vs. G 0.35 (G) 0.233 (G) >1 (-) 7 (-) >0.05
rs2157082 chr6:32760714 HLA-DOB [-19826bp] C - 12 T vs. G 0.475 (G) 0.258 (G) >1 (-) 16 (-) >0.05
rs9276615 chr6:32743217 HLA-DQB2 [+11906bp] C - 12 T vs. C 0.35 (C) 0.233 (C) >1 (-) 4 (-) >0.05
rs9276171 chr6:32698918 HLA-DQA2 [-10201bp] C - 11 A vs. G 0.208 (G) 0.108 (G) <1 (-) 0 (-) >0.05
rs9276263 chr6:32701974 HLA-DQA2 [-7145bp] C - 11 A vs. G - 0.258 (G) >1 (-) 12 (-) >0.05
rs2857210 chr6:32741742 HLA-DQB2 [+10431bp] C - 12 A vs. G 0.35 (A) 0.292 (A) <1 (-) 11 (-) >0.05
rs115793818 chr6:32729613 HLA-DQB2 C - 3 T vs. C - - <1 (-) 58 (-) >0.05
rs2621380 chr6:32761353 HLA-DOB [-19187bp] C - 12 T vs. C 0.483 (C) 0.25 (C) >1 (-) 15 (-) >0.05
rs113702169 chr6:32666374 HLA-DQB1 [+30214bp] C - 8 A vs. C - - <1 (-) 21 (-) >0.05
rs9469242 chr6:32690593 HLA-DQA2 [-18526bp] C - 11 A vs. G 0.325 (A) - <1 (-) 18 (-) >0.05
rs28371271 chr6:32674343 HLA-DQA2 [-34776bp] C - 12 A vs. G 0.275 (A) 0.458 (G) >1 (-) 47 (-) >0.05
rs2857201 chr6:32745156 HLA-DQB2 [+13845bp] C - 12 C vs. G 0.342 (C) 0.233 (C) <1 (-) 10 (-) >0.05
rs2170183 chr6:32745324 HLA-DQB2 [+14013bp] C - 12 T vs. C 0.342 (T) 0.233 (T) <1 (-) 10 (-) >0.05
rs9276550 chr6:32722243 HLA-DQB2 [-1632bp] C - 10 T vs. G 0.2 (T) - <1 (-) 0 (-) >0.05
rs2857199 chr6:32746012 HLA-DQB2 [+14701bp] C - 12 A vs. G - - <1 (-) 13 (-) >0.05
rs2621411 chr6:32744321 HLA-DQB2 [+13010bp] C - 12 T vs. C 0.367 (T) 0.233 (T) <1 (-) 9 (-) >0.05
rs2857205 chr6:32744145 HLA-DQB2 [+12834bp] C - 12 A vs. G 0.35 (A) 0.233 (A) <1 (-) 9 (-) >0.05
rs9276010 chr6:32694686 HLA-DQA2 [-14433bp] C - 9 A vs. T 0.067 (T) - >1 (-) 0 (-) >0.05
rs12192620 chr6:32674318 HLA-DQA2 [-34801bp] C - 12 A vs. G 0.283 (A) 0.492 (G) >1 (-) 47 (-) >0.05
rs28893524 chr6:32746671 HLA-DQB2 [+15360bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs2071551 chr6:32729459 HLA-DQB2 C - 12 T vs. C 0.492 (C) 0.142 (C) <1 (-) 21 (-) >0.05
rs9276576 chr6:32725832 HLA-DQB2 C - 8 A vs. G 0.2 (G) - <1 (-) 0 (-) >0.05
rs145420575 chr6:32761126 HLA-DOB [-19414bp] C - 11 T vs. C - - <1 (-) 12 (-) >0.05
rs75786451 chr6:32664646 HLA-DQB1 [+28486bp] C - 8 T vs. C - 0.042 (C) >1 (-) 20 (-) >0.05
rs2859113 chr6:32697785 HLA-DQA2 [-11334bp] C - 11 C vs. G 0.492 (G) 0.3 (C) <1 (-) 14 (-) >0.05
rs12205281 chr6:32686324 HLA-DQA2 [-22795bp] C - 12 T vs. G 0.325 (G) 0.333 (T) <1 (-) 15 (-) >0.05
rs116283121 chr6:32685649 HLA-DQA2 [-23470bp] C - 6 A vs. G - - <1 (-) 8 (-) >0.05
rs141973979 chr6:32743732 HLA-DQB2 [+12421bp] C - 10 A vs. G - - >1 (-) 0 (-) >0.05
rs138904557 chr6:32743754 HLA-DQB2 [+12443bp] C - 10 T vs. C - - >1 (-) 0 (-) >0.05
rs2621406 chr6:32747959 HLA-DQB2 [+16648bp] C - 12 T vs. G 0.342 (G) 0.242 (G) >1 (-) 9 (-) >0.05
rs2857191 chr6:32747971 HLA-DQB2 [+16660bp] C - 12 A vs. G 0.35 (A) 0.242 (A) <1 (-) 9 (-) >0.05
rs719653 chr6:32752566 HLA-DQB2 [+21255bp] C - 12 T vs. C 0.342 (C) 0.233 (C) >1 (-) 7 (-) >0.05
rs9276693 chr6:32755937 HLA-DOB [-24603bp] C - 12 A vs. T - - >1 (-) 11 (-) >0.05

Association studies for this region [+]