HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region
Append your own data and create meta-analysis

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs1988565 chr6:32753492 HLA-DQB2 [+22181bp] C - 12 A vs. G 0.342 (G) 0.233 (G) >1 (-) 9 (-) >0.05
rs10484563 chr6:32703162 HLA-DQA2 [-5957bp] C - 10 A vs. G 0.075 (G) - <1 (-) 0 (-) >0.05
rs2857168 chr6:32757131 HLA-DOB [-23409bp] C - 12 T vs. C 0.342 (T) 0.25 (T) <1 (-) 9 (-) >0.05
rs9276423 chr6:32710855 HLA-DQA2 C - 11 A vs. G - - >1 (-) 23 (-) >0.05
rs9276422 chr6:32710848 HLA-DQA2 C - 11 T vs. G - - <1 (-) 23 (-) >0.05
rs2621388 chr6:32757938 HLA-DOB [-22602bp] C - 12 A vs. G 0.342 (A) 0.25 (A) <1 (-) 9 (-) >0.05
rs115326848 chr6:32707853 HLA-DQA2 [-1266bp] C - 5 C vs. G - - <1 (-) 30 (-) >0.05
rs114637299 chr6:32731774 HLA-DQB2 [+463bp] C - 3 T vs. C - - >1 (-) 43 (-) >0.05
rs9276556 chr6:32723233 HLA-DQB2 [-642bp] C - 10 C vs. G 0.2 (C) - <1 (-) 0 (-) >0.05
rs1794520 chr6:32662338 HLA-DQB1 [+26178bp] C - 7 A vs. T 0.1 (A) - >1 (-) 0 (-) >0.05
rs1988564 chr6:32753682 HLA-DQB2 [+22371bp] C - 12 T vs. C 0.342 (T) 0.233 (T) <1 (-) 9 (-) >0.05
rs117193872 chr6:32738627 HLA-DQB2 [+7316bp] C - 10 A vs. G - 0.092 (A) >1 (-) 0 (-) >0.05
rs1988563 chr6:32753739 HLA-DQB2 [+22428bp] C - 12 A vs. T 0.35 (A) 0.233 (A) <1 (-) 9 (-) >0.05
rs9276704 chr6:32756825 HLA-DOB [-23715bp] C - 12 T vs. G 0.342 (T) 0.242 (T) <1 (-) 9 (-) >0.05
rs9276640 chr6:32744684 HLA-DQB2 [+13373bp] C - 12 T vs. C - - >1 (-) 12 (-) >0.05
rs2857198 chr6:32746920 HLA-DQB2 [+15609bp] C - 12 T vs. C 0.342 (T) 0.233 (T) <1 (-) 10 (-) >0.05
rs2857196 chr6:32747012 HLA-DQB2 [+15701bp] C - 12 A vs. G 0.342 (G) 0.233 (G) >1 (-) 10 (-) >0.05
rs2857197 chr6:32746984 HLA-DQB2 [+15673bp] C - 12 T vs. C 0.342 (T) 0.233 (T) <1 (-) 10 (-) >0.05
rs116843640 chr6:32738248 HLA-DQB2 [+6937bp] C - 11 A vs. G - 0.092 (A) >1 (-) 0 (-) >0.05
rs1158783 chr6:32758966 HLA-DOB [-21574bp] C - 12 T vs. C 0.342 (C) 0.25 (C) >1 (-) 8 (-) >0.05
rs117143180 chr6:32738192 HLA-DQB2 [+6881bp] C - 11 C vs. G - 0.092 (C) >1 (-) 0 (-) >0.05
rs116918708 chr6:32738624 HLA-DQB2 [+7313bp] C - 11 A vs. T - 0.092 (A) >1 (-) 0 (-) >0.05
rs2621377 chr6:32763110 HLA-DOB [-17430bp] C - 12 T vs. C 0.483 (C) 0.25 (C) >1 (-) 17 (-) >0.05
rs2051549 chr6:32730086 HLA-DQB2 C - 12 A vs. G 0.492 (G) 0.142 (G) <1 (-) 20 (-) >0.05
rs118115453 chr6:32738600 HLA-DQB2 [+7289bp] C - 11 T vs. C - 0.092 (T) >1 (-) 0 (-) >0.05
rs2857178 chr6:32752788 HLA-DQB2 [+21477bp] C - 12 A vs. G 0.35 (G) 0.233 (G) >1 (-) 10 (-) >0.05
rs117866981 chr6:32738433 HLA-DQB2 [+7122bp] C - 11 T vs. C - 0.092 (T) >1 (-) 0 (-) >0.05
rs116086872 chr6:32683677 HLA-DQA2 [-25442bp] C - 9 A vs. G 0.033 (A) - >1 (-) 31 (-) >0.05
rs117173619 chr6:32738351 HLA-DQB2 [+7040bp] C - 11 A vs. C - 0.092 (A) >1 (-) 0 (-) >0.05
rs2621382 chr6:32760445 HLA-DOB [-20095bp] C - 12 T vs. G 0.483 (G) 0.258 (G) >1 (-) 17 (-) >0.05
rs9276619 chr6:32743548 HLA-DQB2 [+12237bp] C - 12 A vs. G - - <1 (-) 11 (-) >0.05
rs115355381 chr6:32707400 HLA-DQA2 [-1719bp] C - 5 A vs. G - - <1 (-) 30 (-) >0.05
rs2621393 chr6:32755216 HLA-DQB2 [+23905bp] C - 12 C vs. G 0.342 (C) 0.242 (C) <1 (-) 7 (-) >0.05
rs117232560 chr6:32737906 HLA-DQB2 [+6595bp] C - 11 T vs. C - 0.092 (T) >1 (-) 0 (-) >0.05
rs118036863 chr6:32738040 HLA-DQB2 [+6729bp] C - 11 T vs. C - 0.092 (T) >1 (-) 0 (-) >0.05
rs9276617 chr6:32743463 HLA-DQB2 [+12152bp] C - 12 A vs. G - - >1 (-) 14 (-) >0.05
rs1842399 chr6:32753313 HLA-DQB2 [+22002bp] C - 12 C vs. G 0.342 (C) 0.233 (C) <1 (-) 9 (-) >0.05
rs118170592 chr6:32737891 HLA-DQB2 [+6580bp] C - 11 A vs. G - 0.092 (G) <1 (-) 0 (-) >0.05
rs9276430 chr6:32712182 HLA-DQA2 C - 11 T vs. C 0.492 (T) 0.308 (T) <1 (-) 21 (-) >0.05
rs117388287 chr6:32737744 HLA-DQB2 [+6433bp] C - 11 T vs. C - 0.092 (C) <1 (-) 0 (-) >0.05
rs9391742 chr6:32679608 HLA-DQA2 [-29511bp] C - 12 A vs. C 0.258 (A) 0.317 (A) <1 (-) 31 (-) >0.05
rs9276618 chr6:32743483 HLA-DQB2 [+12172bp] C - 12 T vs. C 0.4 (T) 0.25 (T) <1 (-) 4 (-) >0.05
rs2621409 chr6:32746845 HLA-DQB2 [+15534bp] C - 12 T vs. C 0.342 (T) 0.233 (T) <1 (-) 13 (-) >0.05
rs2261684 chr6:32758667 HLA-DOB [-21873bp] C - 12 A vs. T 0.433 (A) 0.258 (A) >1 (-) 2 (-) >0.05
rs148857889 chr6:32736384 HLA-DQB2 [+5073bp] C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs2395261 chr6:32729335 HLA-DQB2 C - 12 T vs. C 0.492 (C) 0.233 (T) >1 (-) 25 (-) >0.05
rs9501208 chr6:32746510 HLA-DQB2 [+15199bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs9394113 chr6:32665167 HLA-DQB1 [+29007bp] C - 12 A vs. G 0.183 (G) 0.3 (G) >1 (-) 2 (-) >0.05
rs719652 chr6:32752577 HLA-DQB2 [+21266bp] C - 12 T vs. C 0.342 (C) 0.233 (C) >1 (-) 10 (-) >0.05
rs62406889 chr6:32672214 HLA-DQB1 [+36054bp] C - 10 T vs. G 0.042 (T) 0.017 (T) >1 (-) 30 (-) >0.05

Association studies for this region [+]