HLA-DQB2, chr6:32723875-32731311 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275503 chr6:32673931 HLA-DQA2 [-35188bp] All: C 99,286 13 G vs. A 0.175 (G) - 0.78 (0.73-0.84) 0 (0-56) 1.84e-12
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276310 chr6:32704523 HLA-DQA2 [-4596bp] C - 11 A vs. G 0.15 (A) 0.042 (A) <1 (-) 0 (-) >0.05
rs9275938 chr6:32692974 HLA-DQA2 [-16145bp] C - 11 T vs. C 0.308 (T) 0.158 (T) <1 (-) 12 (-) >0.05
rs9276715 chr6:32760723 HLA-DOB [-19817bp] C - 12 A vs. G 0.083 (A) - >1 (-) 0 (-) >0.05
rs2621371 chr6:32767091 HLA-DOB [-13449bp] C - 12 T vs. G 0.4 (G) 0.25 (G) >1 (-) 16 (-) >0.05
rs28371309 chr6:32678234 HLA-DQA2 [-30885bp] C - 12 A vs. G 0.275 (A) 0.367 (A) <1 (-) 34 (-) >0.05
rs9276077 chr6:32696564 HLA-DQA2 [-12555bp] C - 10 A vs. T 0.333 (T) 0.258 (T) >1 (-) 22 (-) >0.05
rs9276234 chr6:32700848 HLA-DQA2 [-8271bp] C - 11 A vs. T 0.5 (T) 0.192 (A) <1 (-) 4 (-) >0.05
rs28616273 chr6:32686615 HLA-DQA2 [-22504bp] C - 12 A vs. G 0.317 (G) 0.408 (A) <1 (-) 11 (-) >0.05
rs1978029 chr6:32731710 HLA-DQB2 [+399bp] C - 12 A vs. G 0.467 (G) 0.25 (A) >1 (-) 29 (-) >0.05
rs9276188 chr6:32699262 HLA-DQA2 [-9857bp] C - 11 T vs. C 0.2 (C) - <1 (-) 0 (-) >0.05
rs9275973 chr6:32693711 HLA-DQA2 [-15408bp] C - 11 T vs. C 0.3 (T) 0.167 (T) <1 (-) 13 (-) >0.05
rs9275918 chr6:32692580 HLA-DQA2 [-16539bp] C - 11 T vs. C 0.317 (T) 0.167 (T) <1 (-) 12 (-) >0.05
rs9276153 chr6:32698284 HLA-DQA2 [-10835bp] C - 10 T vs. C 0.342 (C) 0.158 (C) >1 (-) 24 (-) >0.05
rs7769974 chr6:32723518 HLA-DQB2 [-357bp] C - 12 T vs. C 0.408 (C) 0.35 (T) <1 (-) 23 (-) >0.05
rs9275882 chr6:32691766 HLA-DQA2 [-17353bp] C - 11 A vs. G 0.3 (A) 0.158 (A) <1 (-) 13 (-) >0.05
rs9276078 chr6:32696575 HLA-DQA2 [-12544bp] C - 10 A vs. G - - >1 (-) 21 (-) >0.05
rs875961 chr6:32691930 HLA-DQA2 [-17189bp] C - 8 T vs. C 0.15 (C) 0.092 (C) <1 (-) 9 (-) >0.05
rs28724868 chr6:32694258 HLA-DQA2 [-14861bp] C - 5 C vs. G 0.217 (C) 0.383 (C) <1 (-) 49 (-) >0.05
rs9275952 chr6:32693200 HLA-DQA2 [-15919bp] C - 11 A vs. G 0.308 (A) 0.15 (A) <1 (-) 12 (-) >0.05
rs2859102 chr6:32699054 HLA-DQA2 [-10065bp] C - 11 C vs. G 0.292 (G) 0.2 (G) >1 (-) 29 (-) >0.05
rs17219540 chr6:32698997 HLA-DQA2 [-10122bp] C - 4 T vs. G - - >1 (-) 50 (-) >0.05
rs6913646 chr6:32722831 HLA-DQB2 [-1044bp] C - 11 T vs. C - - >1 (-) 31 (-) >0.05
rs9276251 chr6:32701444 HLA-DQA2 [-7675bp] C - 11 A vs. G - - >1 (-) 0 (-) >0.05
rs2859077 chr6:32702562 HLA-DQA2 [-6557bp] C - 11 A vs. G 0.3 (A) 0.242 (A) <1 (-) 17 (-) >0.05
rs2621376 chr6:32763521 HLA-DOB [-17019bp] C - 12 T vs. C 0.392 (T) 0.25 (T) <1 (-) 16 (-) >0.05
rs9275972 chr6:32693696 HLA-DQA2 [-15423bp] C - 11 A vs. C 0.3 (A) 0.167 (A) <1 (-) 13 (-) >0.05
rs9276333 chr6:32705564 HLA-DQA2 [-3555bp] C - 11 T vs. C - - >1 (-) 17 (-) >0.05
rs114147245 chr6:32682845 HLA-DQA2 [-26274bp] C - 4 T vs. C - - >1 (-) 0 (-) >0.05
rs9276033 chr6:32695375 HLA-DQA2 [-13744bp] C - 10 A vs. G - - >1 (-) 24 (-) >0.05
rs28371281 chr6:32675814 HLA-DQA2 [-33305bp] C - 12 A vs. G 0.233 (G) 0.342 (G) >1 (-) 37 (-) >0.05
rs28371282 chr6:32675815 HLA-DQA2 [-33304bp] C - 12 T vs. C 0.242 (T) 0.333 (T) <1 (-) 37 (-) >0.05
rs2257789 chr6:32765383 HLA-DOB [-15157bp] C - 12 A vs. C 0.392 (C) 0.233 (C) >1 (-) 16 (-) >0.05
rs9276191 chr6:32699437 HLA-DQA2 [-9682bp] C - 11 A vs. C 0.2 (A) 0.075 (A) >1 (-) 0 (-) >0.05
rs7450940 chr6:32720919 HLA-DQB2 [-2956bp] C - 12 A vs. G 0.408 (A) 0.233 (G) >1 (-) 24 (-) >0.05
rs9275995 chr6:32694364 HLA-DQA2 [-14755bp] C - 10 A vs. G 0.325 (A) 0.167 (A) <1 (-) 21 (-) >0.05
rs9275935 chr6:32692919 HLA-DQA2 [-16200bp] C - 11 T vs. G 0.308 (T) 0.158 (T) <1 (-) 14 (-) >0.05
rs9275997 chr6:32694415 HLA-DQA2 [-14704bp] C - 10 T vs. C 0.3 (C) 0.183 (C) >1 (-) 21 (-) >0.05
rs9276261 chr6:32701920 HLA-DQA2 [-7199bp] C - 11 T vs. C - - >1 (-) 4 (-) >0.05
rs9276326 chr6:32705295 HLA-DQA2 [-3824bp] C - 11 A vs. T 0.492 (T) 0.175 (T) >1 (-) 17 (-) >0.05
rs9276322 chr6:32705030 HLA-DQA2 [-4089bp] C - 11 C vs. G 0.2 (G) - <1 (-) 0 (-) >0.05
rs9275922 chr6:32692688 HLA-DQA2 [-16431bp] C - 10 T vs. C 0.2 (T) - >1 (-) 0 (-) >0.05
rs9275769 chr6:32689431 HLA-DQA2 [-19688bp] C - 11 T vs. C 0.142 (C) 0.083 (C) <1 (-) 0 (-) >0.05
rs9275770 chr6:32689432 HLA-DQA2 [-19687bp] C - 11 A vs. G 0.15 (A) 0.058 (A) >1 (-) 0 (-) >0.05
rs1600571 chr6:32770390 HLA-DOB [-10150bp] C - 12 A vs. G 0.392 (G) 0.25 (G) >1 (-) 16 (-) >0.05
rs9275966 chr6:32693493 HLA-DQA2 [-15626bp] C - 11 T vs. C 0.3 (C) 0.158 (C) >1 (-) 13 (-) >0.05
rs4510718 chr6:32750180 HLA-DQB2 [+18869bp] C - 12 A vs. T - - >1 (-) 0 (-) >0.05
rs9275876 chr6:32691641 HLA-DQA2 [-17478bp] C - 11 T vs. G 0.317 (T) 0.158 (T) <1 (-) 11 (-) >0.05
rs9275974 chr6:32693752 HLA-DQA2 [-15367bp] C - 11 A vs. C 0.308 (C) 0.167 (C) >1 (-) 14 (-) >0.05
rs9275992 chr6:32694271 HLA-DQA2 [-14848bp] C - 10 A vs. C 0.3 (C) 0.167 (C) >1 (-) 18 (-) >0.05
rs9275968 chr6:32693566 HLA-DQA2 [-15553bp] C - 11 T vs. G 0.3 (T) 0.158 (T) <1 (-) 12 (-) >0.05

Association studies for this region [+]