HLA-DQB2, chr6:32723875-32731311 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275503 chr6:32673931 HLA-DQA2 [-35188bp] All: C 99,286 13 G vs. A 0.175 (G) - 0.78 (0.73-0.84) 0 (0-56) 1.84e-12
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs10947342 chr6:32720780 MIR3135B [+3024bp] C - 12 A vs. G 0.408 (G) 0.233 (A) <1 (-) 24 (-) >0.05
rs9275981 chr6:32693918 HLA-DQA2 [-15201bp] C - 11 T vs. G 0.333 (T) 0.175 (T) <1 (-) 10 (-) >0.05
rs9275967 chr6:32693520 HLA-DQA2 [-15599bp] C - 11 A vs. G 0.3 (G) 0.158 (G) >1 (-) 12 (-) >0.05
rs9275969 chr6:32693570 HLA-DQA2 [-15549bp] C - 11 A vs. G 0.317 (A) 0.125 (A) <1 (-) 12 (-) >0.05
rs2858882 chr6:32702277 HLA-DQA2 [-6842bp] C - 11 A vs. C - - >1 (-) 11 (-) >0.05
rs9276382 chr6:32707783 HLA-DQA2 [-1336bp] C - 11 A vs. G 0.15 (G) 0.033 (G) >1 (-) 0 (-) >0.05
rs9275985 chr6:32694044 HLA-DQA2 [-15075bp] C - 11 A vs. G 0.3 (A) 0.167 (A) <1 (-) 12 (-) >0.05
rs9276373 chr6:32707508 HLA-DQA2 [-1611bp] C - 11 T vs. C 0.15 (C) 0.042 (C) >1 (-) 0 (-) >0.05
rs9276502 chr6:32719666 MIR3135B [+1910bp] C - 9 A vs. C 0.083 (C) - >1 (-) 33 (-) >0.05
chr6:32734697 chr6:32734697 HLA-DQB2 [+3386bp] C - 5 T vs. C - - <1 (-) 0 (-) >0.05
rs9275975 chr6:32693821 HLA-DQA2 [-15298bp] C - 11 T vs. C 0.317 (C) 0.167 (C) >1 (-) 11 (-) >0.05
rs6902711 chr6:32731892 HLA-DQB2 [+581bp] C - 12 A vs. C 0.45 (C) 0.217 (A) >1 (-) 28 (-) >0.05
rs2857152 chr6:32762654 HLA-DOB [-17886bp] C - 12 A vs. G 0.392 (A) 0.25 (A) <1 (-) 13 (-) >0.05
rs9276338 chr6:32705644 HLA-DQA2 [-3475bp] C - 11 C vs. G - - <1 (-) 18 (-) >0.05
rs4947346 chr6:32728376 HLA-DQB2 C - 12 C vs. G 0.492 (G) 0.225 (G) <1 (-) 28 (-) >0.05
rs9276099 chr6:32696911 HLA-DQA2 [-12208bp] C - 10 T vs. G - - <1 (-) 26 (-) >0.05
rs2051598 chr6:32709363 HLA-DQA2 C - 11 A vs. G 0.283 (G) 0.117 (G) >1 (-) 16 (-) >0.05
rs763026 chr6:32691745 HLA-DQA2 [-17374bp] C - 11 T vs. C 0.2 (T) 0.092 (T) >1 (-) 0 (-) >0.05
rs9275979 chr6:32693903 HLA-DQA2 [-15216bp] C - 11 A vs. C 0.3 (C) 0.167 (C) >1 (-) 10 (-) >0.05
rs9276357 chr6:32706559 HLA-DQA2 [-2560bp] C - 11 T vs. G 0.2 (G) - <1 (-) 0 (-) >0.05
rs2859071 chr6:32703366 HLA-DQA2 [-5753bp] C - 11 T vs. C 0.5 (T) 0.233 (T) <1 (-) 10 (-) >0.05
rs9276589 chr6:32733259 HLA-DQB2 [+1948bp] C - 12 A vs. G 0.425 (G) 0.242 (A) >1 (-) 27 (-) >0.05
rs9275871 chr6:32691555 HLA-DQA2 [-17564bp] C - 11 T vs. C - - >1 (-) 10 (-) >0.05
rs9275954 chr6:32693260 HLA-DQA2 [-15859bp] C - 10 A vs. C 0.375 (C) - >1 (-) 18 (-) >0.05
rs9275958 chr6:32693347 HLA-DQA2 [-15772bp] C - 11 A vs. G 0.308 (A) 0.15 (A) <1 (-) 14 (-) >0.05
rs9276354 chr6:32706453 HLA-DQA2 [-2666bp] C - 11 T vs. C 0.15 (T) 0.042 (T) <1 (-) 0 (-) >0.05
rs2199871 chr6:32773042 HLA-DOB [-7498bp] C - 12 T vs. G 0.392 (T) 0.258 (T) <1 (-) 16 (-) >0.05
rs9275936 chr6:32692933 HLA-DQA2 [-16186bp] C - 11 A vs. G 0.2 (A) 0.075 (A) >1 (-) 0 (-) >0.05
rs9275982 chr6:32693942 HLA-DQA2 [-15177bp] C - 11 A vs. G 0.3 (A) 0.167 (A) <1 (-) 12 (-) >0.05
rs9276075 chr6:32696543 HLA-DQA2 [-12576bp] C - 11 A vs. C 0.192 (A) 0.042 (A) >1 (-) 0 (-) >0.05
rs9275698 chr6:32687973 HLA-DQA2 [-21146bp] C - 12 A vs. G 0.35 (G) 0.183 (G) <1 (-) 0 (-) >0.05
rs28986342 chr6:32748937 HLA-DQB2 [+17626bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs9276242 chr6:32701189 HLA-DQA2 [-7930bp] C - 11 A vs. C - - <1 (-) 0 (-) >0.05
rs2859082 chr6:32702041 HLA-DQA2 [-7078bp] C - 11 A vs. T - - <1 (-) 0 (-) >0.05
rs2857143 chr6:32772636 HLA-DOB [-7904bp] C - 12 A vs. G 0.383 (A) 0.25 (A) <1 (-) 16 (-) >0.05
rs9275872 chr6:32691561 HLA-DQA2 [-17558bp] C - 11 T vs. C - - <1 (-) 11 (-) >0.05
rs9276280 chr6:32702527 HLA-DQA2 [-6592bp] C - 11 T vs. C 0.292 (C) 0.15 (C) >1 (-) 11 (-) >0.05
rs9276353 chr6:32706449 HLA-DQA2 [-2670bp] C - 11 T vs. C 0.15 (T) 0.042 (T) <1 (-) 0 (-) >0.05
rs4248169 chr6:32728554 HLA-DQB2 C - 12 A vs. C 0.492 (C) 0.233 (C) <1 (-) 29 (-) >0.05
rs9275978 chr6:32693861 HLA-DQA2 [-15258bp] C - 10 A vs. G 0.317 (G) 0.167 (G) >1 (-) 16 (-) >0.05
rs7770045 chr6:32723379 HLA-DQB2 [-496bp] C - 12 T vs. G 0.408 (G) 0.275 (T) <1 (-) 25 (-) >0.05
rs7756516 chr6:32723917 HLA-DQB2 C - 12 T vs. C 0.425 (T) 0.233 (C) >1 (-) 29 (-) >0.05
rs34878595 chr6:32715333 HLA-DQA2 [+341bp] C - 10 C vs. G - - <1 (-) 29 (-) >0.05
rs9276381 chr6:32707740 HLA-DQA2 [-1379bp] C - 11 T vs. C 0.15 (C) 0.042 (C) >1 (-) 0 (-) >0.05
rs9276039 chr6:32695505 HLA-DQA2 [-13614bp] C - 11 A vs. T 0.2 (T) 0.075 (T) <1 (-) 0 (-) >0.05
rs9276278 chr6:32702470 HLA-DQA2 [-6649bp] C - 11 T vs. C 0.3 (C) 0.158 (C) >1 (-) 11 (-) >0.05
rs9276496 chr6:32719017 MIR3135B [+1261bp] C - 11 A vs. G 0.15 (A) 0.083 (A) <1 (-) 17 (-) >0.05
rs28772319 chr6:32686888 HLA-DQA2 [-22231bp] C - 12 A vs. T 0.35 (T) 0.342 (A) <1 (-) 14 (-) >0.05
rs9276604 chr6:32735120 HLA-DQB2 [+3809bp] C - 12 T vs. C 0.425 (T) 0.242 (C) <1 (-) 28 (-) >0.05
rs12207915 chr6:32777752 HLA-DOB [-2788bp] C - 12 T vs. C 0.033 (C) 0.25 (C) >1 (-) 8 (-) >0.05

Association studies for this region [+]