HLA-DQB2, chr6:32723875-32731311 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275503 chr6:32673931 HLA-DQA2 [-35188bp] All: C 99,286 13 G vs. A 0.175 (G) - 0.78 (0.73-0.84) 0 (0-56) 1.84e-12
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs5001632 chr6:32723097 HLA-DQB2 [-778bp] C - 12 A vs. C 0.417 (A) 0.242 (C) >1 (-) 28 (-) >0.05
rs2857153 chr6:32762641 HLA-DOB [-17899bp] C - 12 T vs. C 0.483 (C) 0.258 (C) >1 (-) 17 (-) >0.05
rs9276628 chr6:32743861 HLA-DQB2 [+12550bp] C - 12 A vs. G 0.35 (G) 0.233 (G) >1 (-) 7 (-) >0.05
rs2157082 chr6:32760714 HLA-DOB [-19826bp] C - 12 T vs. G 0.475 (G) 0.258 (G) >1 (-) 16 (-) >0.05
rs9276615 chr6:32743217 HLA-DQB2 [+11906bp] C - 12 T vs. C 0.35 (C) 0.233 (C) >1 (-) 4 (-) >0.05
rs9276171 chr6:32698918 HLA-DQA2 [-10201bp] C - 11 A vs. G 0.208 (G) 0.108 (G) <1 (-) 0 (-) >0.05
rs9276263 chr6:32701974 HLA-DQA2 [-7145bp] C - 11 A vs. G - 0.258 (G) >1 (-) 12 (-) >0.05
rs2857210 chr6:32741742 HLA-DQB2 [+10431bp] C - 12 A vs. G 0.35 (A) 0.292 (A) <1 (-) 11 (-) >0.05
rs115793818 chr6:32729613 HLA-DQB2 C - 3 T vs. C - - <1 (-) 58 (-) >0.05
rs2621380 chr6:32761353 HLA-DOB [-19187bp] C - 12 T vs. C 0.483 (C) 0.25 (C) >1 (-) 15 (-) >0.05
rs9469242 chr6:32690593 HLA-DQA2 [-18526bp] C - 11 A vs. G 0.325 (A) - <1 (-) 18 (-) >0.05
rs28371271 chr6:32674343 HLA-DQA2 [-34776bp] C - 12 A vs. G 0.275 (A) 0.458 (G) >1 (-) 47 (-) >0.05
rs2857201 chr6:32745156 HLA-DQB2 [+13845bp] C - 12 C vs. G 0.342 (C) 0.233 (C) <1 (-) 10 (-) >0.05
rs2170183 chr6:32745324 HLA-DQB2 [+14013bp] C - 12 T vs. C 0.342 (T) 0.233 (T) <1 (-) 10 (-) >0.05
rs9276550 chr6:32722243 HLA-DQB2 [-1632bp] C - 10 T vs. G 0.2 (T) - <1 (-) 0 (-) >0.05
rs2857199 chr6:32746012 HLA-DQB2 [+14701bp] C - 12 A vs. G - - <1 (-) 13 (-) >0.05
rs2621411 chr6:32744321 HLA-DQB2 [+13010bp] C - 12 T vs. C 0.367 (T) 0.233 (T) <1 (-) 9 (-) >0.05
rs2857205 chr6:32744145 HLA-DQB2 [+12834bp] C - 12 A vs. G 0.35 (A) 0.233 (A) <1 (-) 9 (-) >0.05
rs9276010 chr6:32694686 HLA-DQA2 [-14433bp] C - 9 A vs. T 0.067 (T) - >1 (-) 0 (-) >0.05
rs12192620 chr6:32674318 HLA-DQA2 [-34801bp] C - 12 A vs. G 0.283 (A) 0.492 (G) >1 (-) 47 (-) >0.05
rs28893524 chr6:32746671 HLA-DQB2 [+15360bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs2071551 chr6:32729459 HLA-DQB2 C - 12 T vs. C 0.492 (C) 0.142 (C) <1 (-) 21 (-) >0.05
rs9276576 chr6:32725832 HLA-DQB2 C - 8 A vs. G 0.2 (G) - <1 (-) 0 (-) >0.05
rs145420575 chr6:32761126 HLA-DOB [-19414bp] C - 11 T vs. C - - <1 (-) 12 (-) >0.05
rs2859113 chr6:32697785 HLA-DQA2 [-11334bp] C - 11 C vs. G 0.492 (G) 0.3 (C) <1 (-) 14 (-) >0.05
rs12205281 chr6:32686324 HLA-DQA2 [-22795bp] C - 12 T vs. G 0.325 (G) 0.333 (T) <1 (-) 15 (-) >0.05
rs116283121 chr6:32685649 HLA-DQA2 [-23470bp] C - 6 A vs. G - - <1 (-) 8 (-) >0.05
rs141973979 chr6:32743732 HLA-DQB2 [+12421bp] C - 10 A vs. G - - >1 (-) 0 (-) >0.05
rs138904557 chr6:32743754 HLA-DQB2 [+12443bp] C - 10 T vs. C - - >1 (-) 0 (-) >0.05
rs2621406 chr6:32747959 HLA-DQB2 [+16648bp] C - 12 T vs. G 0.342 (G) 0.242 (G) >1 (-) 9 (-) >0.05
rs2857191 chr6:32747971 HLA-DQB2 [+16660bp] C - 12 A vs. G 0.35 (A) 0.242 (A) <1 (-) 9 (-) >0.05
rs719653 chr6:32752566 HLA-DQB2 [+21255bp] C - 12 T vs. C 0.342 (C) 0.233 (C) >1 (-) 7 (-) >0.05
rs9276693 chr6:32755937 HLA-DOB [-24603bp] C - 12 A vs. T - - >1 (-) 11 (-) >0.05
rs142092388 chr6:32745219 HLA-DQB2 [+13908bp] C - 11 A vs. C - - >1 (-) 0 (-) >0.05
rs9276506 chr6:32719914 MIR3135B [+2158bp] C - 11 T vs. C 0.317 (C) 0.225 (C) <1 (-) 44 (-) >0.05
rs2857206 chr6:32744050 HLA-DQB2 [+12739bp] C - 12 A vs. G 0.358 (G) 0.233 (G) >1 (-) 11 (-) >0.05
rs2621419 chr6:32741006 HLA-DQB2 [+9695bp] C - 12 T vs. C 0.35 (T) 0.292 (T) <1 (-) 12 (-) >0.05
rs28772330 chr6:32690316 HLA-DQA2 [-18803bp] C - 12 A vs. C 0.35 (C) 0.333 (A) <1 (-) 17 (-) >0.05
rs9276621 chr6:32743617 HLA-DQB2 [+12306bp] C - 12 A vs. G 0.417 (A) - <1 (-) 10 (-) >0.05
rs12203586 chr6:32679591 HLA-DQA2 [-29528bp] C - 12 C vs. G 0.267 (C) 0.35 (C) <1 (-) 31 (-) >0.05
rs9276620 chr6:32743614 HLA-DQB2 [+12303bp] C - 12 A vs. G 0.408 (A) - <1 (-) 10 (-) >0.05
rs3213488 chr6:32724312 HLA-DQB2 C - 12 C vs. G 0.425 (G) 0.233 (C) <1 (-) 27 (-) >0.05
rs9276622 chr6:32743624 HLA-DQB2 [+12313bp] C - 12 T vs. G - - <1 (-) 11 (-) >0.05
rs2857194 chr6:32747273 HLA-DQB2 [+15962bp] C - 12 A vs. T 0.342 (A) 0.233 (A) <1 (-) 8 (-) >0.05
rs762815 chr6:32729642 HLA-DQB2 C - 12 C vs. G 0.5 (C) 0.142 (G) <1 (-) 20 (-) >0.05
rs117186380 chr6:32741886 HLA-DQB2 [+10575bp] C - 10 A vs. G - 0.058 (G) <1 (-) 0 (-) >0.05
rs9276262 chr6:32701959 HLA-DQA2 [-7160bp] C - 11 T vs. C - - <1 (-) 11 (-) >0.05
rs2857195 chr6:32747060 HLA-DQB2 [+15749bp] C - 12 T vs. C 0.342 (C) 0.233 (C) >1 (-) 10 (-) >0.05
rs2621390 chr6:32757453 HLA-DOB [-23087bp] C - 12 T vs. C 0.342 (C) 0.233 (C) >1 (-) 8 (-) >0.05
rs138987885 chr6:32677418 HLA-DQA2 [-31701bp] C - 6 A vs. G - - <1 (-) 20 (-) >0.05

Association studies for this region [+]