HSPA12B, chr20:3713314-3733758 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs8124665 chr20:3666952 SIGLEC1 [-665bp] C - 10 A vs. G 0.017 (G) 0.125 (G) >1 (-) 26 (-) <0.05

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs77889744 chr20:3750054 C20orf27 [+1020bp] C - 12 C vs. G 0.025 (G) - <1 (-) 30 (-) >0.05
rs484597 chr20:3740874 C20orf27 C - 12 T vs. C 0.375 (T) 0.275 (T) <1 (-) 1 (-) >0.05
rs78012956 chr20:3724123 HSPA12B C - 13 T vs. C 0.233 (T) 0.275 (T) <1 (-) 0 (-) >0.05
rs41279388 chr20:3726687 HSPA12B C - 13 A vs. G 0.133 (A) 0.142 (A) <1 (-) 0 (-) >0.05
rs880278 chr20:3740079 C20orf27 C - 12 A vs. G 0.025 (A) 0.067 (A) >1 (-) 36 (-) >0.05
rs6084438 chr20:3683431 SIGLEC1 C - 13 A vs. C 0.283 (C) 0.2 (C) <1 (-) 48 (-) >0.05
rs112311490 chr20:3746887 C20orf27 C - 5 T vs. C 0.008 (T) - >1 (-) 0 (-) >0.05
rs6139190 chr20:3723581 HSPA12B C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs6116026 chr20:3745127 C20orf27 C - 12 A vs. G 0.183 (G) 0.333 (G) <1 (-) 0 (-) >0.05
rs528863 chr20:3667198 SIGLEC1 [-419bp] C - 13 T vs. C 0.358 (C) 0.142 (C) <1 (-) 10 (-) >0.05
rs11697735 chr20:3709225 HSPA12B [-4089bp] C - 13 A vs. G 0.283 (A) - >1 (-) 16 (-) >0.05
chr20:3688698 chr20:3688698 SIGLEC1 [+923bp] C - 5 T vs. C - - >1 (-) 0 (-) >0.05
rs6139191 chr20:3724708 HSPA12B C - 13 A vs. G 0.233 (G) 0.25 (G) >1 (-) 0 (-) >0.05
rs73586748 chr20:3704092 HSPA12B [-9222bp] C - 3 T vs. C - - >1 (-) 9 (-) >0.05
rs580502 chr20:3711864 HSPA12B [-1450bp] C - 12 A vs. C 0.233 (C) 0.358 (C) <1 (-) 0 (-) >0.05
rs6116022 chr20:3742874 C20orf27 C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs146191789 chr20:3667219 SIGLEC1 [-398bp] C - 9 T vs. C - - <1 (-) 0 (-) >0.05
rs490152 chr20:3746863 C20orf27 C - 12 C vs. G 0.392 (G) 0.217 (G) >1 (-) 0 (-) >0.05
rs62206555 chr20:3730524 HSPA12B C - 13 A vs. G 0.325 (A) 0.233 (A) <1 (-) 0 (-) >0.05
rs11569988 chr20:3779234 CDC25B C - 13 T vs. C - - >1 (-) 32 (-) >0.05
rs6139200 chr20:3743723 C20orf27 C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs6139182 chr20:3689420 SIGLEC1 [+1645bp] C - 13 T vs. C - - <1 (-) 12 (-) >0.05
rs2228465 chr20:3782702 CDC25B C - 13 A vs. G - - >1 (-) 33 (-) >0.05
rs4411789 chr20:3705958 HSPA12B [-7356bp] C - 13 C vs. G 0.492 (G) - <1 (-) 0 (-) >0.05
rs541760 chr20:3732633 HSPA12B C - 13 T vs. C 0.45 (T) 0.492 (C) >1 (-) 0 (-) >0.05
rs910654 chr20:3758426 SPEF1 C - 13 C vs. G 0.225 (G) 0.3 (G) <1 (-) 5 (-) >0.05
rs1321128 chr20:3714688 HSPA12B C - 13 A vs. G 0.167 (A) 0.117 (A) <1 (-) 0 (-) >0.05
rs709012 chr20:3675498 SIGLEC1 C - 13 T vs. G 0.467 (T) 0.217 (T) >1 (-) 41 (-) >0.05
rs6116031 chr20:3751217 C20orf27 [+2183bp] C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs525339 chr20:3677014 SIGLEC1 C - 13 T vs. C 0.467 (C) 0.217 (C) <1 (-) 44 (-) >0.05
rs2295343 chr20:3735601 C20orf27 C - 13 A vs. G 0.367 (G) 0.217 (G) <1 (-) 9 (-) >0.05
rs13043452 chr20:3706114 HSPA12B [-7200bp] C - 13 A vs. G - - >1 (-) 27 (-) >0.05
rs6116020 chr20:3742093 C20orf27 C - 12 T vs. C 0.283 (T) - >1 (-) 0 (-) >0.05
rs3761218 chr20:3776175 CDC25B C - 13 T vs. C 0.417 (C) 0.275 (C) >1 (-) 0 (-) >0.05
rs3761215 chr20:3750366 C20orf27 [+1332bp] C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs6107343 chr20:3754079 SPEF1 [-4072bp] C - 13 A vs. G - 0.275 (A) <1 (-) 0 (-) >0.05
rs7275146 chr20:3676740 SIGLEC1 C - 13 T vs. C 0.125 (T) 0.217 (T) <1 (-) 0 (-) >0.05
rs73895626 chr20:3758074 SPEF1 [-77bp] C - 12 A vs. G 0.017 (A) - >1 (-) 35 (-) >0.05
rs3761219 chr20:3776368 CDC25B C - 13 T vs. C 0.417 (T) 0.275 (T) <1 (-) 0 (-) >0.05
rs79074744 chr20:3773674 CDC25B C - 13 A vs. C 0.067 (C) - <1 (-) 12 (-) >0.05
rs77985312 chr20:3698683 SIGLEC1 [+10908bp] C - 8 T vs. C - - <1 (-) 50 (-) >0.05
rs6076543 chr20:3697891 SIGLEC1 [+10116bp] C - 13 T vs. G - - <1 (-) 0 (-) >0.05
rs8117597 chr20:3696096 SIGLEC1 [+8321bp] C - 8 T vs. C - - <1 (-) 50 (-) >0.05
rs149978527 chr20:3676054 SIGLEC1 C - 8 A vs. G - - <1 (-) 50 (-) >0.05
rs4815598 chr20:3701425 HSPA12B [-11889bp] C - 13 C vs. G 0.5 (C) 0.45 (C) >1 (-) 0 (-) >0.05
rs61734522 chr20:3674309 SIGLEC1 C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs4815603 chr20:3772527 CDC25B C - 13 A vs. T 0.417 (A) 0.275 (A) <1 (-) 0 (-) >0.05
rs6084460 chr20:3752279 C20orf27 [+3245bp] C - 13 T vs. C 0.4 (T) 0.275 (T) <1 (-) 0 (-) >0.05
rs3746637 chr20:3673445 SIGLEC1 C - 13 T vs. C 0.133 (T) 0.283 (T) <1 (-) 0 (-) >0.05
rs6116032 chr20:3751841 C20orf27 [+2807bp] C - 13 A vs. G - - <1 (-) 0 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.