HSPA12B, chr20:3713314-3733758 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs8124665 chr20:3666952 SIGLEC1 [-665bp] C - 10 A vs. G 0.017 (G) 0.125 (G) >1 (-) 26 (-) <0.05

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6139187 chr20:3705691 HSPA12B [-7623bp] C - 13 A vs. G 0.467 (G) 0.392 (G) >1 (-) 24 (-) >0.05
rs9171 chr20:3734386 C20orf27 C - 13 T vs. C 0.275 (C) 0.217 (C) <1 (-) 13 (-) >0.05
rs6116033 chr20:3752643 C20orf27 [+3609bp] C - 13 T vs. C 0.4 (T) 0.275 (T) <1 (-) 0 (-) >0.05
rs735710 chr20:3692839 SIGLEC1 [+5064bp] C - 13 T vs. C 0.083 (C) 0.175 (C) >1 (-) 3 (-) >0.05
rs4813642 chr20:3701867 HSPA12B [-11447bp] C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs4815596 chr20:3671800 SIGLEC1 C - 13 A vs. G 0.117 (A) 0.292 (A) <1 (-) 0 (-) >0.05
rs4813641 chr20:3701663 HSPA12B [-11651bp] C - 13 T vs. C - 0.442 (T) >1 (-) 0 (-) >0.05
rs501538 chr20:3677357 SIGLEC1 C - 11 T vs. C 0.008 (T) 0.0 (T) <1 (-) 0 (-) >0.05
rs117628351 chr20:3753495 C20orf27 [+4461bp] C - 12 A vs. C 0.05 (A) - >1 (-) 0 (-) >0.05
rs2017118 chr20:3763030 SPEF1 [+935bp] C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs7267071 chr20:3697164 SIGLEC1 [+9389bp] C - 13 T vs. C 0.067 (T) 0.167 (T) <1 (-) 9 (-) >0.05
rs4813640 chr20:3696808 SIGLEC1 [+9033bp] C - 13 T vs. G 0.067 (G) 0.167 (G) >1 (-) 9 (-) >0.05
rs6116025 chr20:3744660 C20orf27 C - 8 A vs. G - - >1 (-) 14 (-) >0.05
rs509764 chr20:3716457 HSPA12B C - 13 A vs. G 0.425 (A) 0.4 (G) <1 (-) 0 (-) >0.05
rs2180272 chr20:3704070 HSPA12B [-9244bp] C - 13 A vs. C 0.458 (A) 0.417 (A) <1 (-) 27 (-) >0.05
rs532448 chr20:3666838 SIGLEC1 [-779bp] C - 13 A vs. T 0.442 (T) 0.492 (A) >1 (-) 0 (-) >0.05
rs77688198 chr20:3747768 C20orf27 C - 12 A vs. T 0.117 (T) 0.225 (T) <1 (-) 18 (-) >0.05
rs472910 chr20:3744964 C20orf27 C - 12 A vs. T 0.483 (A) 0.242 (T) >1 (-) 0 (-) >0.05
rs500247 chr20:3736304 C20orf27 C - 11 A vs. G - - >1 (-) 9 (-) >0.05
rs7260803 chr20:3694603 SIGLEC1 [+6828bp] C - 13 T vs. G 0.067 (T) 0.175 (T) <1 (-) 5 (-) >0.05
rs6037651 chr20:3686436 SIGLEC1 C - 13 T vs. C 0.492 (C) 0.433 (C) >1 (-) 28 (-) >0.05
rs513220 chr20:3665765 SIGLEC1 [-1852bp] C - 11 A vs. G 0.025 (A) - >1 (-) 0 (-) >0.05
rs514862 chr20:3739895 C20orf27 C - 12 C vs. G 0.158 (C) 0.125 (C) >1 (-) 10 (-) >0.05
rs3787399 chr20:3740122 C20orf27 C - 13 T vs. C 0.067 (T) 0.133 (T) >1 (-) 0 (-) >0.05
rs1018491 chr20:3701132 HSPA12B [-12182bp] C - 13 T vs. C 0.458 (C) 0.417 (C) >1 (-) 23 (-) >0.05
rs2295340 chr20:3734514 C20orf27 C - 13 T vs. C 0.317 (C) 0.217 (C) <1 (-) 16 (-) >0.05
rs4815604 chr20:3772913 CDC25B C - 13 T vs. C 0.492 (C) 0.275 (C) >1 (-) 0 (-) >0.05
rs6116045 chr20:3778691 CDC25B C - 13 A vs. G 0.425 (G) 0.275 (A) <1 (-) 21 (-) >0.05
rs13044945 chr20:3722628 HSPA12B C - 13 A vs. G 0.283 (A) - >1 (-) 0 (-) >0.05
rs2281479 chr20:3762095 SPEF1 C - 13 T vs. C 0.217 (C) 0.317 (C) <1 (-) 0 (-) >0.05
rs579111 chr20:3763872 CENPB [-626bp] C - 13 T vs. C 0.4 (T) 0.258 (T) <1 (-) 10 (-) >0.05
rs6107346 chr20:3778676 CDC25B C - 13 T vs. C 0.433 (T) 0.275 (C) >1 (-) 19 (-) >0.05
rs621624 chr20:3741800 C20orf27 C - 12 A vs. G 0.433 (A) 0.275 (A) <1 (-) 0 (-) >0.05
rs622922 chr20:3742095 C20orf27 C - 12 A vs. G 0.417 (A) - <1 (-) 0 (-) >0.05
rs6076542 chr20:3685997 SIGLEC1 C - 12 T vs. C 0.033 (C) - <1 (-) 13 (-) >0.05
rs140074052 chr20:3757142 SPEF1 [-1009bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs6133060 chr20:3754035 SPEF1 [-4116bp] C - 13 T vs. C 0.392 (T) 0.275 (T) <1 (-) 0 (-) >0.05
rs13043330 chr20:3756597 SPEF1 [-1554bp] C - 13 T vs. C 0.417 (T) 0.35 (T) <1 (-) 10 (-) >0.05
rs6116042 chr20:3776968 CDC25B C - 13 A vs. T 0.492 (T) - >1 (-) 0 (-) >0.05
rs11569974 chr20:3775354 CDC25B C - 11 A vs. T 0.067 (A) - >1 (-) 0 (-) >0.05
rs78859190 chr20:3692073 SIGLEC1 [+4298bp] C - 13 C vs. G 0.033 (G) 0.133 (G) >1 (-) 0 (-) >0.05
rs111383129 chr20:3748775 C20orf27 C - 13 A vs. G 0.075 (A) - >1 (-) 0 (-) >0.05
rs7273763 chr20:3723759 HSPA12B C - 12 T vs. C - 0.175 (T) >1 (-) 0 (-) >0.05
rs932529 chr20:3779629 CDC25B C - 13 A vs. G 0.417 (A) 0.275 (G) >1 (-) 23 (-) >0.05
rs534280 chr20:3666640 SIGLEC1 [-977bp] C - 13 A vs. G 0.467 (A) 0.492 (A) <1 (-) 0 (-) >0.05
rs3746644 chr20:3778433 CDC25B C - 13 T vs. C 0.45 (C) 0.275 (T) <1 (-) 17 (-) >0.05
rs4815605 chr20:3777946 CDC25B C - 13 A vs. G 0.5 (G) 0.267 (G) >1 (-) 0 (-) >0.05
rs12479553 chr20:3770053 CDC25B C - 13 A vs. G 0.458 (A) 0.275 (G) >1 (-) 0 (-) >0.05
rs113372838 chr20:3755126 SPEF1 [-3025bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs6084472 chr20:3771858 CDC25B C - 13 A vs. C 0.492 (C) 0.275 (C) >1 (-) 0 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.