LINGO3, chr19:2289774-2308156 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs1128402 chr19:2353150 LSM7 [+24531bp] All: C 103,235 14 A vs. C 0.283 (A) 0.342 (C) 1.12 (1.08-1.17) 46 (0-71) 8.40e-09
Meta_image?name=rs1128402

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2523167 chr19:2266434 JSRP1 C - 11 A vs. G 0.342 (G) 0.325 (A) <1 (-) 0 (-) >0.05
rs2854112 chr19:2273836 OAZ1 [+349bp] C - 11 T vs. C 0.35 (C) 0.367 (T) <1 (-) 0 (-) >0.05
rs2854109 chr19:2267198 JSRP1 C - 11 C vs. G 0.342 (C) 0.383 (G) >1 (-) 0 (-) >0.05
rs116703616 chr19:2335525 LSM7 [+6906bp] C - 11 T vs. C 0.108 (C) 0.058 (C) >1 (-) 0 (-) >0.05
rs7254381 chr19:2305765 LINGO3 C - 11 T vs. G 0.242 (G) 0.383 (T) <1 (-) 49 (-) >0.05
rs11878710 chr19:2336008 LSM7 [+7389bp] C - 11 T vs. C 0.108 (C) 0.05 (C) >1 (-) 0 (-) >0.05
rs2854110 chr19:2269142 JSRP1 C - 11 A vs. G 0.267 (G) 0.092 (G) <1 (-) 5 (-) >0.05
rs118084321 chr19:2332323 LSM7 [+3704bp] C - 11 A vs. G 0.108 (A) 0.042 (A) <1 (-) 0 (-) >0.05
rs115510080 chr19:2336109 LSM7 [+7490bp] C - 11 A vs. G 0.108 (G) 0.05 (G) >1 (-) 0 (-) >0.05
rs143502226 chr19:2335669 LSM7 [+7050bp] C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs117619473 chr19:2335452 LSM7 [+6833bp] C - 11 T vs. C 0.108 (T) 0.05 (T) <1 (-) 0 (-) >0.05
rs2302057 chr19:2324060 LSM7 C - 10 A vs. G 0.15 (A) - >1 (-) 30 (-) >0.05
rs2158263 chr19:2281997 C19orf35 C - 11 C vs. G 0.242 (G) 0.308 (G) <1 (-) 0 (-) >0.05
rs8103741 chr19:2325005 LSM7 C - 10 A vs. G 0.192 (G) 0.225 (G) <1 (-) 27 (-) >0.05
rs73520573 chr19:2335169 LSM7 [+6550bp] C - 11 T vs. G 0.1 (G) 0.05 (G) >1 (-) 0 (-) >0.05
rs2270048 chr19:2326215 LSM7 C - 10 T vs. C 0.183 (T) 0.217 (T) >1 (-) 27 (-) >0.05
rs886883 chr19:2326988 LSM7 C - 10 C vs. G 0.183 (C) 0.208 (C) >1 (-) 26 (-) >0.05
rs11668896 chr19:2278007 C19orf35 C - 10 T vs. C - - >1 (-) 15 (-) >0.05
rs7254747 chr19:2304775 LINGO3 C - 11 T vs. C - - >1 (-) 44 (-) >0.05
rs11671102 chr19:2277987 C19orf35 C - 10 C vs. G - - >1 (-) 16 (-) >0.05
rs8113255 chr19:2306653 LINGO3 C - 11 A vs. G 0.217 (A) 0.4 (A) >1 (-) 47 (-) >0.05
rs115892676 chr19:2335822 LSM7 [+7203bp] C - 11 T vs. G 0.117 (T) - <1 (-) 0 (-) >0.05
rs4806838 chr19:2327856 LSM7 C - 10 C vs. G 0.175 (C) 0.208 (C) >1 (-) 26 (-) >0.05
rs12976963 chr19:2303276 LINGO3 C - 11 A vs. G 0.258 (A) 0.383 (G) >1 (-) 50 (-) >0.05
rs45521740 chr19:2245622 SF3A2 C - 10 A vs. G 0.05 (A) - >1 (-) 8 (-) >0.05
rs8108067 chr19:2304359 LINGO3 C - 11 T vs. C 0.25 (T) 0.375 (C) >1 (-) 49 (-) >0.05
rs11667839 chr19:2307341 LINGO3 C - 11 T vs. G 0.217 (T) 0.417 (T) >1 (-) 47 (-) >0.05
rs60680600 chr19:2307960 LINGO3 C - 11 A vs. G 0.292 (G) 0.408 (G) <1 (-) 46 (-) >0.05
rs10418405 chr19:2296098 LINGO3 C - 11 C vs. G 0.192 (C) 0.108 (C) >1 (-) 4 (-) >0.05
rs8100329 chr19:2303158 LINGO3 C - 11 C vs. G 0.225 (C) 0.417 (C) >1 (-) 46 (-) >0.05
rs12462019 chr19:2295984 LINGO3 C - 11 C vs. G 0.2 (G) 0.092 (G) <1 (-) 2 (-) >0.05
rs11667219 chr19:2277988 C19orf35 C - 11 A vs. G - - >1 (-) 16 (-) >0.05
rs12977540 chr19:2303462 LINGO3 C - 11 A vs. G 0.192 (A) 0.4 (A) >1 (-) 47 (-) >0.05
rs8110383 chr19:2302801 LINGO3 C - 11 A vs. G 0.175 (G) 0.4 (G) <1 (-) 47 (-) >0.05
rs8101137 chr19:2297369 LINGO3 C - 11 T vs. C - - >1 (-) 9 (-) >0.05
rs140630995 chr19:2314894 LSM7 [-6622bp] C - 6 T vs. G - - >1 (-) 0 (-) >0.05
rs11879876 chr19:2295629 LINGO3 C - 11 T vs. G - - >1 (-) 3 (-) >0.05
rs74788173 chr19:2287530 LINGO3 [-2244bp] C - 11 A vs. T 0.117 (A) 0.1 (A) >1 (-) 0 (-) >0.05
rs7258841 chr19:2290499 LINGO3 C - 11 T vs. C 0.1 (T) 0.342 (T) >1 (-) 0 (-) >0.05
rs45486197 chr19:2244849 SF3A2 C - 10 A vs. G 0.058 (A) - >1 (-) 8 (-) >0.05
rs45502694 chr19:2244623 SF3A2 C - 10 T vs. G 0.058 (G) - <1 (-) 0 (-) >0.05
rs62119707 chr19:2296837 LINGO3 C - 11 T vs. C - - <1 (-) 14 (-) >0.05
rs117419939 chr19:2318087 LSM7 [-3429bp] C - 11 T vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs1128392 chr19:2344022 LSM7 [+15403bp] C - 5 A vs. G 0.075 (A) - >1 (-) 47 (-) >0.05
rs2523178 chr19:2275079 C19orf35 C - 11 A vs. G 0.317 (A) 0.108 (A) >1 (-) 17 (-) >0.05
rs11084929 chr19:2294552 LINGO3 C - 11 T vs. G 0.108 (T) 0.108 (T) >1 (-) 0 (-) >0.05
rs3764603 chr19:2288338 LINGO3 [-1436bp] C - 11 A vs. T 0.117 (T) 0.108 (T) <1 (-) 0 (-) >0.05
rs7253353 chr19:2287000 LINGO3 [-2774bp] C - 11 A vs. T 0.117 (T) 0.117 (T) <1 (-) 0 (-) >0.05
rs75183089 chr19:2346990 LSM7 [+18371bp] C - 5 A vs. C 0.042 (C) 0.158 (C) <1 (-) 14 (-) >0.05
rs118034773 chr19:2329771 LSM7 [+1152bp] C - 6 A vs. T 0.008 (T) - >1 (-) 0 (-) >0.05

Association studies for this region [+]