LTA, chr6:31539831-31542101 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3130068 chr6:31590354 PRRC2A All: C 103,235 14 G vs. A 0.2 (G) 0.025 (G) 1.13 (1.08-1.18) 34 (0-65) 6.41e-08
Meta_image?name=rs3130068

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3130068 chr6:31590354 PRRC2A All: C 103,235 14 G vs. A 0.2 (G) 0.025 (G) 1.13 (1.08-1.18) 34 (0-65) 6.41e-08
rs2857609 chr6:31577825 AIF1 [-5136bp] All: C 103,235 14 A vs. G 0.2 (A) 0.025 (A) 1.13 (1.08-1.18) 35 (0-66) 1.55e-07
rs3130062 chr6:31525912 NFKBIL1 All: C 103,235 14 C vs. T 0.1 (C) 0.0 (C) 1.18 (1.10-1.26) 17 (0-55) 1.52e-06
rs2857700 chr6:31572481 AIF1 [-10480bp] All: C 103,235 14 T vs. C 0.167 (T) 0.017 (T) 1.12 (1.07-1.17) 51 (10-73) 1.75e-06
rs2857600 chr6:31582287 AIF1 [-674bp] All: C 103,235 14 T vs. C 0.2 (T) 0.0 (T) 1.11 (1.06-1.16) 40 (0-68) 1.81e-05
rs2857598 chr6:31563228 NCR3 [+2466bp] All: C 103,235 14 A vs. C 0.183 (A) 0.05 (A) 1.11 (1.06-1.16) 34 (0-65) 2.17e-05
rs17200768 chr6:31553935 LST1 C - 11 T vs. C - - >1 (-) 0 (-) <1.00e-04
rs2736177 chr6:31586094 AIF1 [+1296bp] C - 12 T vs. C 0.183 (C) 0.0 (C) <1 (-) 45 (-) <0.05
rs2736192 chr6:31559353 NCR3 All: C 103,235 14 G vs. A - - 0.92 (0.88-0.96) 33 (0-65) 5.43e-04
rs2857709 chr6:31532814 NFKBIL1 [+6208bp] All: C 103,235 14 A vs. G 0.158 (A) 0.033 (A) 1.08 (1.03-1.13) 27 (0-62) 9.64e-04
rs3130069 chr6:31591218 PRRC2A C - 12 A vs. G - - <1 (-) 35 (-) <0.05
rs45593732 chr6:31583725 AIF1 C - 10 T vs. C 0.017 (T) - >1 (-) 0 (-) <0.05
rs2516392 chr6:31529334 NFKBIL1 [+2728bp] C - 12 C vs. G 0.417 (C) 0.408 (C) >1 (-) 34 (-) <0.05
rs2516391 chr6:31529335 NFKBIL1 [+2729bp] C - 12 T vs. G 0.4 (T) 0.408 (T) >1 (-) 34 (-) <0.05
rs2844492 chr6:31518169 NFKBIL1 C - 5 A vs. G - - >1 (-) 0 (-) <0.05
rs928815 chr6:31531215 NFKBIL1 [+4609bp] C - 12 T vs. G 0.358 (T) 0.392 (T) >1 (-) 29 (-) <0.05
rs2844486 chr6:31533870 LTA [-5961bp] C - 12 A vs. G - - >1 (-) 29 (-) <0.05
rs114762763 chr6:31514786 ATP6V1G2 C - 3 C vs. G - - >1 (-) 0 (-) <0.05
rs137914942 chr6:31518562 NFKBIL1 C - 3 C vs. G - - >1 (-) 0 (-) <0.05
rs2844485 chr6:31534206 LTA [-5625bp] C - 12 A vs. G - - >1 (-) 29 (-) <0.05
rs2516390 chr6:31529883 NFKBIL1 [+3277bp] C - 12 T vs. C 0.358 (C) 0.392 (C) <1 (-) 30 (-) <0.05
rs1121800 chr6:31535074 LTA [-4757bp] C - 12 A vs. T 0.35 (A) 0.358 (A) >1 (-) 28 (-) <0.05
rs2844484 chr6:31536224 LTA [-3607bp] C - 12 A vs. G 0.358 (A) 0.392 (A) >1 (-) 29 (-) <0.05
rs2844483 chr6:31536796 LTA [-3035bp] C - 12 T vs. G 0.358 (T) 0.392 (T) >1 (-) 29 (-) <0.05
rs3135042 chr6:31532254 NFKBIL1 [+5648bp] C - 12 A vs. G - - <1 (-) 29 (-) <0.05
rs2239704 chr6:31540141 LTA C - 12 A vs. C 0.358 (A) 0.392 (A) >1 (-) 29 (-) <0.05
rs2857710 chr6:31532553 NFKBIL1 [+5947bp] C - 12 T vs. C - - <1 (-) 32 (-) <0.05
rs746868 chr6:31540429 LTA C - 12 C vs. G 0.358 (C) 0.358 (C) >1 (-) 29 (-) <0.05
rs2516479 chr6:31528326 NFKBIL1 [+1720bp] C - 12 C vs. G 0.367 (G) 0.392 (G) <1 (-) 31 (-) <0.05
rs3135043 chr6:31532193 NFKBIL1 [+5587bp] C - 12 A vs. G - - <1 (-) 30 (-) <0.05
rs3094595 chr6:31530574 NFKBIL1 [+3968bp] C - 12 T vs. G - - <1 (-) 26 (-) <0.05
rs2857597 chr6:31585000 AIF1 [+202bp] C - 11 A vs. T 0.308 (T) 0.017 (T) <1 (-) 0 (-) <0.05
rs117997480 chr6:31518707 NFKBIL1 C - 11 A vs. G - 0.025 (A) >1 (-) 32 (-) <0.05
rs2523500 chr6:31518354 NFKBIL1 C - 12 A vs. G 0.358 (G) 0.275 (G) <1 (-) 0 (-) <0.05
rs34451818 chr6:31583841 AIF1 C - 10 C vs. G 0.05 (G) - >1 (-) 12 (-) <0.05
chr6:31535299 chr6:31535299 LTA [-4532bp] C - 10 C vs. G - - >1 (-) 0 (-) <0.05
rs9267516 chr6:31569901 NCR3 [+9139bp] C - 12 T vs. C - - <1 (-) 18 (-) <0.05
rs71563354 chr6:31585041 AIF1 [+243bp] C - 11 C vs. G - - >1 (-) 0 (-) <0.05
rs3093664 chr6:31544642 TNF C - 12 A vs. G 0.05 (G) - >1 (-) 15 (-) <0.05
rs34571801 chr6:31581977 AIF1 [-984bp] C - 11 C vs. G - - >1 (-) 0 (-) <0.05
rs2229094 chr6:31540556 LTA C - 12 T vs. C 0.25 (C) 0.217 (C) >1 (-) 9 (-) <0.05
rs2071590 chr6:31539768 LTA [-63bp] C - 12 A vs. G 0.367 (A) 0.267 (A) >1 (-) 0 (-) <0.05
rs2516394 chr6:31506000 DDX39B C - 11 T vs. C 0.208 (C) 0.067 (C) <1 (-) 5 (-) <0.05
rs56111157 chr6:31571894 AIF1 [-11067bp] C - 12 A vs. G 0.108 (A) 0.092 (A) >1 (-) 0 (-) <0.05
rs2857599 chr6:31562150 NCR3 [+1388bp] C - 12 A vs. G 0.125 (A) 0.125 (A) <1 (-) 0 (-) <0.05
rs115978492 chr6:31576863 AIF1 [-6098bp] C - 12 A vs. C 0.017 (A) 0.033 (A) >1 (-) 0 (-) <0.05
rs146591430 chr6:31507160 DDX39B C - 11 A vs. G - - >1 (-) 0 (-) <0.05
rs145786943 chr6:31533817 LTA [-6014bp] C - 11 T vs. C - - <1 (-) 0 (-) <0.05
rs11575838 chr6:31560565 NCR3 C - 11 T vs. C - - <1 (-) 0 (-) <0.05
rs3093539 chr6:31538277 LTA [-1554bp] C - 11 A vs. G - - <1 (-) 0 (-) <0.05

Association studies for this region [+]