PCED1A, chr20:2815960-2821836 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
Meta_image?name=rs7268763

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs570673 chr20:2871015 PTPRA C - 13 C vs. G 0.483 (G) 0.117 (G) <1 (-) 18 (-) <0.05
rs6138921 chr20:2849232 PTPRA C - 13 A vs. G 0.267 (G) 0.308 (G) >1 (-) 0 (-) <0.05
rs6037422 chr20:2832565 VPS16 C - 13 A vs. G 0.375 (A) - <1 (-) 25 (-) <0.05
rs4815550 chr20:2833458 VPS16 C - 13 A vs. G 0.358 (G) 0.4 (A) >1 (-) 25 (-) <0.05
rs4815551 chr20:2833577 VPS16 C - 13 T vs. C 0.358 (T) 0.417 (C) <1 (-) 20 (-) <0.05
rs4815552 chr20:2833578 VPS16 C - 13 A vs. G 0.358 (G) 0.417 (A) >1 (-) 20 (-) <0.05
rs6138915 chr20:2833964 VPS16 C - 13 A vs. G - - >1 (-) 25 (-) <0.05
rs127073 chr20:2787994 CPXM1 [+6711bp] C - 13 A vs. G 0.425 (A) 0.4 (G) <1 (-) 0 (-) <0.05
rs6051440 chr20:2834555 VPS16 C - 13 T vs. G - - <1 (-) 24 (-) <0.05
rs2325972 chr20:2834975 VPS16 C - 13 C vs. G 0.375 (C) 0.408 (G) <1 (-) 24 (-) <0.05
rs85166 chr20:2788274 CPXM1 [+6991bp] C - 13 T vs. C 0.417 (C) 0.4 (T) >1 (-) 0 (-) <0.05
rs6051439 chr20:2834433 VPS16 C - 13 T vs. C - - <1 (-) 23 (-) <0.05
rs215556 chr20:2788897 TMEM239 [-6717bp] C - 13 A vs. G - - <1 (-) 0 (-) <0.05
rs7273259 chr20:2767262 CPXM1 [-7453bp] C - 13 A vs. G 0.433 (A) 0.267 (A) >1 (-) 0 (-) <0.05
rs6051449 chr20:2842685 VPS16 C - 13 A vs. C 0.417 (C) 0.433 (A) >1 (-) 0 (-) <0.05
rs2875807 chr20:2834801 VPS16 C - 13 T vs. G 0.358 (T) 0.408 (G) <1 (-) 18 (-) <0.05
rs6051456 chr20:2856288 PTPRA C - 13 A vs. T 0.408 (A) 0.417 (T) <1 (-) 0 (-) <0.05
rs117321792 chr20:2868750 PTPRA C - 10 T vs. C - 0.083 (T) <1 (-) 1 (-) <0.05
rs78309811 chr20:2870295 PTPRA C - 10 C vs. G 0.008 (G) 0.083 (G) >1 (-) 4 (-) <0.05
rs6084177 chr20:2791245 TMEM239 [-4369bp] C - 13 A vs. G 0.383 (A) 0.4 (A) <1 (-) 0 (-) <0.05
rs730819 chr20:2845130 VPS16 C - 13 A vs. G 0.425 (A) 0.433 (G) <1 (-) 0 (-) <0.05
rs6138926 chr20:2865742 PTPRA C - 13 T vs. C 0.408 (T) 0.417 (C) <1 (-) 0 (-) <0.05
rs215543 chr20:2780151 CPXM1 C - 13 A vs. G 0.2 (G) 0.417 (G) >1 (-) 0 (-) <0.05
rs74582408 chr20:2856185 PTPRA C - 10 A vs. G - 0.1 (A) <1 (-) 0 (-) <0.05
rs215545 chr20:2782015 CPXM1 [+732bp] C - 13 T vs. C 0.2 (T) 0.417 (T) <1 (-) 0 (-) <0.05
rs7268366 chr20:2782522 CPXM1 [+1239bp] C - 13 T vs. C 0.108 (T) 0.225 (T) <1 (-) 0 (-) <0.05
rs67367303 chr20:2773790 CPXM1 [-925bp] C - 13 C vs. G 0.117 (C) 0.425 (C) <1 (-) 0 (-) <0.05
rs6138925 chr20:2864481 PTPRA C - 10 T vs. C - 0.075 (C) >1 (-) 0 (-) <0.05
rs118056770 chr20:2862746 PTPRA C - 10 A vs. G - 0.083 (G) >1 (-) 0 (-) <0.05
rs118114765 chr20:2863719 PTPRA C - 10 T vs. C 0.008 (T) - <1 (-) 0 (-) <0.05
rs76194999 chr20:2839920 VPS16 C - 10 C vs. G - 0.092 (G) >1 (-) 0 (-) <0.05
rs11087557 chr20:2791341 TMEM239 [-4273bp] C - 13 A vs. T 0.108 (T) 0.333 (T) >1 (-) 0 (-) <0.05
rs619498 chr20:2861394 PTPRA C - 13 T vs. C 0.342 (T) 0.467 (C) <1 (-) 19 (-) <0.05
rs215555 chr20:2787651 CPXM1 [+6368bp] C - 13 T vs. C - - >1 (-) 3 (-) <0.05
rs57186792 chr20:2860087 PTPRA C - 10 A vs. G - 0.083 (G) >1 (-) 0 (-) <0.05
rs74532464 chr20:2859440 PTPRA C - 10 A vs. G - 0.083 (A) <1 (-) 0 (-) <0.05
rs73606175 chr20:2790517 TMEM239 [-5097bp] C - 13 A vs. G 0.108 (G) 0.383 (G) >1 (-) 0 (-) <0.05
rs77380663 chr20:2847894 PTPRA C - 9 T vs. C 0.017 (C) 0.042 (C) >1 (-) 0 (-) <0.05
rs34211052 chr20:2780683 CPXM1 C - 13 A vs. G 0.1 (A) 0.225 (A) <1 (-) 0 (-) <0.05
rs61386698 chr20:2856734 PTPRA C - 10 T vs. G 0.008 (G) 0.083 (G) >1 (-) 0 (-) <0.05
rs61091656 chr20:2860223 PTPRA C - 10 C vs. G 0.017 (G) 0.108 (G) >1 (-) 0 (-) >0.05
rs13043754 chr20:2783771 CPXM1 [+2488bp] C - 13 A vs. G 0.117 (G) 0.417 (G) >1 (-) 0 (-) >0.05
rs56054109 chr20:2770535 CPXM1 [-4180bp] C - 13 A vs. G 0.5 (A) 0.25 (A) >1 (-) 0 (-) >0.05
rs73083219 chr20:2818348 PCED1A C - 6 T vs. C 0.008 (T) - <1 (-) 0 (-) >0.05
rs6138918 chr20:2837058 VPS16 C - 10 A vs. G 0.017 (G) 0.075 (G) >1 (-) 0 (-) >0.05
rs2143635 chr20:2793063 TMEM239 [-2551bp] C - 13 T vs. C 0.1 (C) 0.183 (C) >1 (-) 0 (-) >0.05
rs6138922 chr20:2851665 PTPRA C - 10 T vs. C 0.008 (T) 0.075 (T) <1 (-) 0 (-) >0.05
rs11699077 chr20:2829158 VPS16 C - 13 A vs. G 0.125 (G) 0.367 (G) >1 (-) 0 (-) >0.05
rs2073130 chr20:2778459 CPXM1 C - 13 A vs. G 0.092 (A) 0.225 (A) <1 (-) 0 (-) >0.05
rs2297048 chr20:2840929 VPS16 C - 10 A vs. G 0.008 (A) 0.075 (A) <1 (-) 0 (-) >0.05

Association studies for this region [+]