PDPN, chr1:13909960-13944452 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs77767280 chr1:13890612 PDPN [-19348bp] C - 3 A vs. T - 0.125 (T) >1 (-) 0 (-) <0.05

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs74380582 chr1:13874678 LRRC38 [+34135bp] C - 10 T vs. C 0.008 (T) - <1 (-) 0 (-) >0.05
rs77793475 chr1:13948910 RNA5SP41 [-769bp] C - 4 C vs. G 0.042 (G) 0.008 (G) <1 (-) 0 (-) >0.05
rs354579 chr1:13890057 PDPN [-19903bp] C - 13 C vs. G - - <1 (-) 0 (-) >0.05
rs11584648 chr1:13939650 PDPN C - 13 A vs. G 0.042 (A) 0.05 (A) >1 (-) 31 (-) >0.05
rs61777774 chr1:13897341 PDPN [-12619bp] C - 13 T vs. C 0.125 (T) - >1 (-) 14 (-) >0.05
rs17389711 chr1:13879172 PDPN [-30788bp] C - 11 T vs. G - - >1 (-) 0 (-) >0.05
rs61776637 chr1:13886204 PDPN [-23756bp] C - 13 A vs. C 0.05 (A) 0.075 (A) >1 (-) 0 (-) >0.05
rs56809541 chr1:13888858 PDPN [-21102bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs2495029 chr1:13990258 PRDM2 [-36435bp] C - 13 T vs. C 0.1 (C) - <1 (-) 0 (-) >0.05
rs16851999 chr1:13919780 PDPN C - 13 A vs. G 0.175 (A) 0.025 (A) >1 (-) 12 (-) >0.05
rs10927907 chr1:13923574 PDPN C - 13 T vs. C 0.15 (C) 0.075 (C) <1 (-) 0 (-) >0.05
rs17390097 chr1:13923944 PDPN C - 13 A vs. G 0.15 (G) - <1 (-) 0 (-) >0.05
rs2924867 chr1:13901615 PDPN [-8345bp] C - 13 A vs. G 0.483 (A) 0.317 (G) >1 (-) 0 (-) >0.05
rs61777773 chr1:13897315 PDPN [-12645bp] C - 13 A vs. G - - >1 (-) 15 (-) >0.05
rs876931 chr1:13944568 PDPN [+116bp] C - 13 T vs. C 0.383 (C) 0.425 (T) >1 (-) 13 (-) >0.05
rs2486178 chr1:13992069 PRDM2 [-34624bp] C - 12 A vs. G 0.1 (G) 0.05 (G) <1 (-) 0 (-) >0.05
rs680489 chr1:13902429 PDPN [-7531bp] C - 13 A vs. G 0.483 (A) 0.35 (G) >1 (-) 0 (-) >0.05
rs364391 chr1:13892599 PDPN [-17361bp] C - 13 T vs. C 0.275 (T) - >1 (-) 4 (-) >0.05
rs355013 chr1:13903098 PDPN [-6862bp] C - 13 T vs. C 0.483 (C) 0.35 (T) <1 (-) 0 (-) >0.05
rs2492763 chr1:13860919 LRRC38 [+20376bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs1261015 chr1:13908031 PDPN [-1929bp] C - 13 A vs. G 0.342 (A) 0.317 (G) >1 (-) 0 (-) >0.05
rs355014 chr1:13903601 PDPN [-6359bp] C - 13 T vs. C 0.483 (C) 0.325 (T) <1 (-) 0 (-) >0.05
rs9970183 chr1:13895993 PDPN [-13967bp] C - 13 A vs. G 0.075 (G) 0.017 (G) <1 (-) 10 (-) >0.05
rs2940302 chr1:13901217 PDPN [-8743bp] C - 13 C vs. G - - >1 (-) 0 (-) >0.05
rs12410048 chr1:13956166 RNA5SP41 [+6387bp] C - 10 C vs. G 0.092 (G) 0.125 (G) >1 (-) 0 (-) >0.05
rs142923096 chr1:13958585 RNA5SP41 [+8806bp] C - 5 T vs. C - - >1 (-) 0 (-) >0.05
rs454865 chr1:13894036 PDPN [-15924bp] C - 13 C vs. G 0.292 (C) 0.408 (G) >1 (-) 3 (-) >0.05
rs58712305 chr1:13863632 LRRC38 [+23089bp] C - 13 A vs. G 0.067 (A) 0.258 (A) <1 (-) 17 (-) >0.05
rs61777782 chr1:13922400 PDPN C - 13 A vs. G 0.15 (G) - <1 (-) 4 (-) >0.05
rs4661648 chr1:13867891 LRRC38 [+27348bp] C - 13 A vs. G 0.133 (A) 0.383 (A) >1 (-) 50 (-) >0.05
rs7554435 chr1:13865932 LRRC38 [+25389bp] C - 13 A vs. C - - >1 (-) 0 (-) >0.05
rs12564444 chr1:13863307 LRRC38 [+22764bp] C - 13 A vs. G 0.067 (A) 0.258 (A) <1 (-) 17 (-) >0.05
rs113324021 chr1:13888795 PDPN [-21165bp] C - 13 T vs. C 0.067 (C) - <1 (-) 7 (-) >0.05
rs395839 chr1:13874547 LRRC38 [+34004bp] C - 8 A vs. G - 0.033 (A) <1 (-) 13 (-) >0.05
rs355002 chr1:13894851 PDPN [-15109bp] C - 13 T vs. C 0.275 (T) 0.417 (C) >1 (-) 2 (-) >0.05
rs2604094 chr1:13891539 PDPN [-18421bp] C - 13 A vs. T - - >1 (-) 0 (-) >0.05
rs164944 chr1:13898554 PDPN [-11406bp] C - 13 A vs. G 0.467 (A) - >1 (-) 0 (-) >0.05
rs12403687 chr1:13901647 PDPN [-8313bp] C - 13 T vs. C 0.142 (T) - >1 (-) 17 (-) >0.05
rs34018828 chr1:13891697 PDPN [-18263bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs68133711 chr1:13956807 RNA5SP41 [+7028bp] C - 10 A vs. G 0.092 (A) 0.108 (A) <1 (-) 0 (-) >0.05
rs447758 chr1:13893258 PDPN [-16702bp] C - 13 C vs. G - - >1 (-) 2 (-) >0.05
rs354585 chr1:13898563 PDPN [-11397bp] C - 13 T vs. C 0.467 (C) - <1 (-) 0 (-) >0.05
rs10927872 chr1:13885203 PDPN [-24757bp] C - 12 T vs. C 0.467 (C) 0.217 (T) <1 (-) 15 (-) >0.05
rs12732247 chr1:13927062 PDPN C - 13 C vs. G - - <1 (-) 0 (-) >0.05
rs12025117 chr1:13898812 PDPN [-11148bp] C - 13 T vs. C 0.133 (T) - >1 (-) 16 (-) >0.05
rs9970032 chr1:13897945 PDPN [-12015bp] C - 13 T vs. G - - >1 (-) 15 (-) >0.05
rs9970043 chr1:13898450 PDPN [-11510bp] C - 13 A vs. G - - >1 (-) 15 (-) >0.05
rs10492979 chr1:13992480 PRDM2 [-34213bp] C - 13 A vs. G 0.1 (G) 0.05 (G) <1 (-) 0 (-) >0.05
rs59835073 chr1:13947024 PDPN [+2572bp] C - 13 T vs. C 0.375 (T) 0.425 (C) <1 (-) 3 (-) >0.05
rs4391657 chr1:13937281 PDPN C - 13 T vs. C 0.217 (T) 0.208 (T) <1 (-) 8 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.