POU5F1, chr6:31132119-31148508 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3130446 chr6:31119997 CCHCR1 All: C 103,235 14 T vs. G - - 0.94 (0.90-0.97) 0 (0-10) 4.68e-04
rs1265108 chr6:31119869 CCHCR1 All: C 103,235 14 C vs. T - - 1.06 (1.03-1.10) 0 (0-41) 4.78e-04
rs9357109 chr6:31144771 POU5F1 All: C 103,235 14 A vs. C 0.175 (A) 0.375 (A) 0.93 (0.89-0.97) 29 (0-62) 4.81e-04
rs3130575 chr6:31113106 CCHCR1 All: C 103,235 14 A vs. G 0.283 (A) 0.342 (A) 1.07 (1.03-1.11) 0 (0-3) 4.91e-04
rs28397273 chr6:31164750 HCG27 [-787bp] All: C 103,235 14 G vs. T 0.175 (G) 0.358 (G) 0.93 (0.89-0.97) 30 (0-63) 5.28e-04
rs28397272 chr6:31164739 HCG27 [-798bp] All: C 103,235 14 A vs. C 0.175 (A) 0.367 (A) 0.93 (0.89-0.97) 30 (0-63) 5.34e-04
rs28397274 chr6:31164763 HCG27 [-774bp] All: C 103,235 14 G vs. A 0.167 (G) 0.367 (G) 0.93 (0.89-0.97) 21 (0-58) 5.61e-04
rs28749549 chr6:31157830 HCG27 [-7707bp] All: C 103,235 14 T vs. C 0.175 (T) 0.242 (T) 0.93 (0.89-0.97) 27 (0-61) 5.93e-04
rs9380221 chr6:31150873 POU5F1 [+2365bp] All: C 103,235 14 C vs. T 0.183 (C) 0.375 (C) 0.93 (0.89-0.97) 29 (0-63) 6.23e-04
rs3094225 chr6:31113052 CCHCR1 All: C 103,235 14 G vs. A 0.317 (G) 0.483 (A) 1.06 (1.03-1.10) 0 (0-20) 6.33e-04
rs28360058 chr6:31155615 POU5F1 [+7107bp] All: C 103,235 14 G vs. A 0.175 (G) 0.2 (G) 0.93 (0.89-0.97) 28 (0-62) 6.34e-04
rs3130515 chr6:31190122 HCG27 [+18377bp] All: C 103,235 14 C vs. T - - 0.92 (0.88-0.97) 5 (0-57) 6.42e-04
rs3130451 chr6:31123242 CCHCR1 All: C 103,235 14 G vs. A - - 0.94 (0.90-0.97) 0 (0-15) 6.43e-04
rs28360059 chr6:31155920 POU5F1 [+7412bp] All: C 103,235 14 G vs. A - - 1.08 (1.03-1.13) 28 (0-62) 6.62e-04
rs9380220 chr6:31146584 POU5F1 All: C 103,235 14 T vs. G 0.175 (T) 0.375 (T) 0.93 (0.90-0.97) 29 (0-62) 6.73e-04
rs28397277 chr6:31164943 HCG27 [-594bp] All: C 103,235 14 A vs. G 0.175 (A) 0.242 (A) 0.93 (0.89-0.97) 28 (0-62) 6.74e-04
rs11961983 chr6:31168483 HCG27 All: C 103,235 14 G vs. A 0.175 (G) 0.242 (G) 0.93 (0.89-0.97) 27 (0-61) 6.79e-04
rs28397284 chr6:31166936 HCG27 All: C 103,235 14 C vs. T 0.175 (C) 0.233 (C) 0.93 (0.89-0.97) 28 (0-62) 6.79e-04
rs116011117 chr6:31194753 HCG27 [+23008bp] C - 12 T vs. C 0.033 (C) - <1 (-) 0 (-) <0.05
rs3130516 chr6:31190128 HCG27 [+18383bp] All: C 103,235 14 C vs. T - - 0.93 (0.88-0.97) 3 (0-56) 7.07e-04
rs1052989 chr6:31146403 POU5F1 All: C 103,235 14 T vs. C 0.175 (T) 0.375 (T) 0.93 (0.90-0.97) 29 (0-63) 7.16e-04
rs11507945 chr6:31145755 POU5F1 All: C 103,235 14 A vs. G 0.175 (A) 0.375 (A) 0.93 (0.90-0.97) 29 (0-63) 7.18e-04
rs9357113 chr6:31149091 POU5F1 [+583bp] All: C 103,235 14 T vs. G 0.175 (T) 0.375 (T) 0.93 (0.89-0.97) 28 (0-62) 7.20e-04
rs6921663 chr6:31154620 POU5F1 [+6112bp] All: C 103,235 14 C vs. T 0.2 (C) 0.4 (C) 0.94 (0.90-0.97) 17 (0-55) 7.26e-04
rs3130450 chr6:31121513 CCHCR1 All: C 103,235 14 T vs. C - - 0.94 (0.91-0.97) 0 (0-9) 7.36e-04
rs2022084 chr6:31117053 CCHCR1 All: C 103,235 14 A vs. G 0.292 (A) 0.4 (A) 1.06 (1.03-1.10) 0 (0-6) 7.71e-04
rs3130498 chr6:31117619 CCHCR1 All: C 103,235 14 T vs. C 0.283 (T) 0.425 (T) 1.06 (1.03-1.10) 0 (0-6) 7.91e-04
rs149162659 chr6:31191744 HCG27 [+19999bp] C - 12 A vs. G - - >1 (-) 0 (-) <0.05
rs3887152 chr6:31176335 HCG27 [+4590bp] All: C 103,235 14 T vs. C 0.4 (T) 0.3 (T) 0.95 (0.91-0.98) 8 (0-45) 7.98e-04
rs9263671 chr6:31087305 PSORS1C1 C - 12 T vs. C 0.158 (T) 0.05 (T) >1 (-) 22 (-) <0.05
rs9368663 chr6:31156155 POU5F1 [+7647bp] All: C 103,235 14 T vs. C 0.183 (T) 0.367 (T) 0.93 (0.90-0.97) 8 (0-45) 8.30e-04
rs115878234 chr6:31192110 HCG27 [+20365bp] C - 12 A vs. G 0.033 (A) - >1 (-) 0 (-) <0.05
rs3094609 chr6:31165566 HCG27 All: C 103,235 14 T vs. C 0.192 (T) 0.167 (T) 1.08 (1.03-1.13) 25 (0-60) 8.45e-04
rs3094608 chr6:31166683 HCG27 All: C 103,235 14 G vs. A 0.192 (G) 0.167 (G) 1.08 (1.03-1.13) 28 (0-62) 8.50e-04
rs3130462 chr6:31165277 HCG27 [-260bp] All: C 103,235 14 A vs. G 0.192 (A) 0.167 (A) 1.08 (1.03-1.13) 25 (0-60) 8.50e-04
rs115057643 chr6:31188995 HCG27 [+17250bp] C - 12 C vs. G 0.033 (C) - >1 (-) 0 (-) <0.05
rs3130461 chr6:31164700 HCG27 [-837bp] All: C 103,235 14 G vs. A 0.208 (G) 0.2 (G) 1.08 (1.03-1.13) 24 (0-60) 8.58e-04
rs3130463 chr6:31165962 HCG27 All: C 103,235 14 G vs. A 0.192 (G) 0.167 (G) 1.08 (1.03-1.13) 25 (0-60) 8.66e-04
rs6928399 chr6:31195218 HCG27 [+23473bp] All: C 103,235 14 T vs. C 0.358 (T) 0.308 (T) 0.95 (0.91-0.98) 1 (0-55) 8.72e-04
rs2074478 chr6:31105633 PSORS1C1 All: C 103,235 14 C vs. T 0.175 (C) 0.267 (C) 1.07 (1.03-1.12) 20 (0-57) 8.92e-04
rs9368662 chr6:31156148 POU5F1 [+7640bp] All: C 103,235 14 T vs. G 0.183 (T) 0.367 (T) 0.93 (0.90-0.97) 8 (0-45) 8.96e-04
rs116069039 chr6:31198493 HCG27 [+26748bp] C - 12 A vs. G 0.033 (G) - <1 (-) 0 (-) <0.05
rs11967629 chr6:31145413 POU5F1 All: C 103,235 14 T vs. C 0.175 (T) 0.375 (T) 0.93 (0.90-0.97) 27 (0-61) 9.75e-04
rs3130501 chr6:31136453 POU5F1 All: C 103,235 14 A vs. G 0.292 (A) 0.392 (A) 1.06 (1.03-1.10) 0 (0-23) 9.96e-04
rs879882 chr6:31139452 POU5F1 C - 12 T vs. C 0.358 (T) 0.408 (C) >1 (-) 2 (-) <0.05
rs9263852 chr6:31156385 POU5F1 [+7877bp] C - 12 C vs. G - - <1 (-) 21 (-) <0.05
rs2240059 chr6:31120614 CCHCR1 All: C 103,235 14 C vs. T 0.283 (C) 0.408 (C) 1.06 (1.02-1.10) 0 (0-9) 0.001
rs1265096 chr6:31106489 PSORS1C1 C - 12 A vs. G 0.067 (A) - <1 (-) 42 (-) <0.05
rs2233952 chr6:31105891 PSORS1C1 All: C 103,235 14 A vs. G 0.125 (A) 0.042 (A) 1.08 (1.03-1.14) 33 (0-65) 0.001
rs3130952 chr6:31177915 HCG27 [+6170bp] All: C 103,235 14 G vs. A 0.192 (G) 0.167 (G) 1.08 (1.03-1.13) 23 (0-59) 0.001

Association studies for this region [+]