PSORS1C1, chr6:31082527-31107869 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9263850 chr6:31156188 POU5F1 [+7680bp] All: C 103,235 14 A vs. G - - 1.10 (1.06-1.14) 13 (0-52) 1.81e-06
Meta_image?name=rs9263850

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9263850 chr6:31156188 POU5F1 [+7680bp] All: C 103,235 14 A vs. G - - 1.10 (1.06-1.14) 13 (0-52) 1.81e-06
rs2256962 chr6:31065620 C6orf15 [-13380bp] C - 12 A vs. G 0.108 (A) 0.0 (A) >1 (-) 7 (-) <1.00e-04
rs1265075 chr6:31113113 CCHCR1 All: C 103,235 14 A vs. C 0.067 (A) 0.158 (A) 0.87 (0.82-0.93) 37 (0-67) 5.04e-05
rs34507986 chr6:31052361 RNU6-1133P [+1475bp] All: C 103,235 14 G vs. A - - 1.19 (1.09-1.29) 39 (0-67) 5.81e-05
rs3130967 chr6:31063413 RNU6-1133P [+12527bp] All: C 103,235 14 C vs. T - - 0.88 (0.83-0.94) 26 (0-61) 1.02e-04
rs1265090 chr6:31108169 PSORS1C1 [+300bp] All: C 103,235 14 G vs. A - - 1.10 (1.05-1.16) 31 (0-64) 1.08e-04
rs4713443 chr6:31155539 POU5F1 [+7031bp] All: C 103,235 14 G vs. T 0.35 (G) 0.475 (G) 0.94 (0.91-0.97) 5 (0-57) 1.10e-04
rs4713444 chr6:31155548 POU5F1 [+7040bp] All: C 103,235 14 G vs. A 0.358 (G) 0.483 (G) 0.94 (0.91-0.97) 5 (0-57) 1.10e-04
rs1265082 chr6:31111606 CCHCR1 All: C 103,235 14 G vs. A - - 1.10 (1.05-1.16) 32 (0-64) 1.14e-04
rs1265110 chr6:31119422 CCHCR1 All: C 103,235 14 T vs. C 0.117 (T) 0.258 (T) 0.91 (0.87-0.95) 31 (0-64) 1.15e-04
rs3130931 chr6:31134888 TCF19 All: C 97,715 13 T vs. C 0.333 (T) 0.392 (T) 1.07 (1.03-1.11) 0 (0-31) 1.68e-04
rs9391818 chr6:31157738 HCG27 [-7799bp] All: C 103,235 14 A vs. G - - 1.08 (1.04-1.13) 26 (0-61) 1.98e-04
rs9405052 chr6:31157709 HCG27 [-7828bp] All: C 103,235 14 C vs. T - - 1.08 (1.04-1.13) 26 (0-61) 1.98e-04
rs9378115 chr6:31156465 POU5F1 [+7957bp] All: C 103,235 14 T vs. C 0.175 (T) 0.367 (T) 0.92 (0.89-0.96) 26 (0-61) 2.04e-04
rs9357115 chr6:31155991 POU5F1 [+7483bp] All: C 103,235 14 T vs. C - - 1.08 (1.04-1.13) 26 (0-61) 2.06e-04
rs35944195 chr6:31074829 C6orf15 [-4171bp] All: C 103,235 14 T vs. C 0.092 (T) 0.117 (T) 0.89 (0.84-0.95) 18 (0-56) 2.07e-04
rs28360056 chr6:31155434 POU5F1 [+6926bp] All: C 103,235 14 G vs. A - - 1.08 (1.04-1.13) 25 (0-60) 2.25e-04
rs4713442 chr6:31155405 POU5F1 [+6897bp] All: C 103,235 14 T vs. C - - 1.08 (1.04-1.13) 25 (0-60) 2.25e-04
rs6899875 chr6:31154897 POU5F1 [+6389bp] All: C 103,235 14 G vs. A - - 1.08 (1.04-1.13) 25 (0-60) 2.30e-04
rs2517438 chr6:31064100 RNU6-1133P [+13214bp] All: C 103,235 14 T vs. C 0.075 (T) 0.0 (T) 1.13 (1.06-1.20) 3 (0-57) 2.86e-04
rs3094194 chr6:31136240 POU5F1 All: C 103,235 14 A vs. G - - 0.94 (0.91-0.97) 30 (0-63) 3.13e-04
rs3094188 chr6:31142245 POU5F1 All: C 103,235 14 C vs. A 0.358 (C) 0.292 (C) 1.06 (1.03-1.10) 15 (0-53) 3.94e-04
rs3094226 chr6:31112899 CCHCR1 All: C 103,235 14 C vs. T 0.275 (C) 0.342 (C) 1.07 (1.03-1.11) 0 (0-1) 4.62e-04
rs3130446 chr6:31119997 CCHCR1 All: C 103,235 14 T vs. G - - 0.94 (0.90-0.97) 0 (0-10) 4.68e-04
rs1265108 chr6:31119869 CCHCR1 All: C 103,235 14 C vs. T - - 1.06 (1.03-1.10) 0 (0-41) 4.78e-04
rs9357109 chr6:31144771 POU5F1 All: C 103,235 14 A vs. C 0.175 (A) 0.375 (A) 0.93 (0.89-0.97) 29 (0-62) 4.81e-04
rs3130575 chr6:31113106 CCHCR1 All: C 103,235 14 A vs. G 0.283 (A) 0.342 (A) 1.07 (1.03-1.11) 0 (0-3) 4.91e-04
rs28749549 chr6:31157830 HCG27 [-7707bp] All: C 103,235 14 T vs. C 0.175 (T) 0.242 (T) 0.93 (0.89-0.97) 27 (0-61) 5.93e-04
rs9380221 chr6:31150873 POU5F1 [+2365bp] All: C 103,235 14 C vs. T 0.183 (C) 0.375 (C) 0.93 (0.89-0.97) 29 (0-63) 6.23e-04
rs3094225 chr6:31113052 CCHCR1 All: C 103,235 14 G vs. A 0.317 (G) 0.483 (A) 1.06 (1.03-1.10) 0 (0-20) 6.33e-04
rs28360058 chr6:31155615 POU5F1 [+7107bp] All: C 103,235 14 G vs. A 0.175 (G) 0.2 (G) 0.93 (0.89-0.97) 28 (0-62) 6.34e-04
rs3130451 chr6:31123242 CCHCR1 All: C 103,235 14 G vs. A - - 0.94 (0.90-0.97) 0 (0-15) 6.43e-04
rs28360059 chr6:31155920 POU5F1 [+7412bp] All: C 103,235 14 G vs. A - - 1.08 (1.03-1.13) 28 (0-62) 6.62e-04
rs9380220 chr6:31146584 POU5F1 All: C 103,235 14 T vs. G 0.175 (T) 0.375 (T) 0.93 (0.90-0.97) 29 (0-62) 6.73e-04
rs1052989 chr6:31146403 POU5F1 All: C 103,235 14 T vs. C 0.175 (T) 0.375 (T) 0.93 (0.90-0.97) 29 (0-63) 7.16e-04
rs11507945 chr6:31145755 POU5F1 All: C 103,235 14 A vs. G 0.175 (A) 0.375 (A) 0.93 (0.90-0.97) 29 (0-63) 7.18e-04
rs9357113 chr6:31149091 POU5F1 [+583bp] All: C 103,235 14 T vs. G 0.175 (T) 0.375 (T) 0.93 (0.89-0.97) 28 (0-62) 7.20e-04
rs6921663 chr6:31154620 POU5F1 [+6112bp] All: C 103,235 14 C vs. T 0.2 (C) 0.4 (C) 0.94 (0.90-0.97) 17 (0-55) 7.26e-04
rs3130450 chr6:31121513 CCHCR1 All: C 103,235 14 T vs. C - - 0.94 (0.91-0.97) 0 (0-9) 7.36e-04
rs2022084 chr6:31117053 CCHCR1 All: C 103,235 14 A vs. G 0.292 (A) 0.4 (A) 1.06 (1.03-1.10) 0 (0-6) 7.71e-04
rs3130498 chr6:31117619 CCHCR1 All: C 103,235 14 T vs. C 0.283 (T) 0.425 (T) 1.06 (1.03-1.10) 0 (0-6) 7.91e-04
rs9263671 chr6:31087305 PSORS1C1 C - 12 T vs. C 0.158 (T) 0.05 (T) >1 (-) 22 (-) <0.05
rs9368663 chr6:31156155 POU5F1 [+7647bp] All: C 103,235 14 T vs. C 0.183 (T) 0.367 (T) 0.93 (0.90-0.97) 8 (0-45) 8.30e-04
rs2074478 chr6:31105633 PSORS1C1 All: C 103,235 14 C vs. T 0.175 (C) 0.267 (C) 1.07 (1.03-1.12) 20 (0-57) 8.92e-04
rs9368662 chr6:31156148 POU5F1 [+7640bp] All: C 103,235 14 T vs. G 0.183 (T) 0.367 (T) 0.93 (0.90-0.97) 8 (0-45) 8.96e-04
rs11967629 chr6:31145413 POU5F1 All: C 103,235 14 T vs. C 0.175 (T) 0.375 (T) 0.93 (0.90-0.97) 27 (0-61) 9.75e-04
rs2517559 chr6:31068525 C6orf15 [-10475bp] C - 12 A vs. C 0.142 (A) 0.042 (A) >1 (-) 8 (-) <0.05
rs3130501 chr6:31136453 POU5F1 All: C 103,235 14 A vs. G 0.292 (A) 0.392 (A) 1.06 (1.03-1.10) 0 (0-23) 9.96e-04
rs879882 chr6:31139452 POU5F1 C - 12 T vs. C 0.358 (T) 0.408 (C) >1 (-) 2 (-) <0.05
rs9263852 chr6:31156385 POU5F1 [+7877bp] C - 12 C vs. G - - <1 (-) 21 (-) <0.05

Association studies for this region [+]