POU5F1, chr6:31132119-31148508 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9263968 chr6:31186368 HCG27 [+14623bp] C - 12 A vs. G 0.45 (G) 0.45 (A) >1 (-) 0 (-) >0.05
rs140918932 chr6:31172903 HCG27 [+1158bp] C - 6 A vs. G - - >1 (-) 0 (-) >0.05
rs887467 chr6:31141664 POU5F1 C - 12 C vs. G 0.358 (G) 0.358 (G) >1 (-) 0 (-) >0.05
rs1042127 chr6:31084170 PSORS1C1 C - 11 A vs. C 0.158 (C) 0.15 (C) <1 (-) 0 (-) >0.05
rs4713436 chr6:31084639 PSORS1C1 C - 11 T vs. C 0.158 (T) 0.15 (T) >1 (-) 0 (-) >0.05
rs9501076 chr6:31165218 HCG27 [-319bp] C - 12 T vs. C - - <1 (-) 33 (-) >0.05
rs143855333 chr6:31181087 HCG27 [+9342bp] C - 6 T vs. G - - <1 (-) 0 (-) >0.05
rs9263938 chr6:31179378 HCG27 [+7633bp] C - 12 T vs. C 0.45 (C) 0.45 (T) <1 (-) 0 (-) >0.05
rs1265156 chr6:31142297 POU5F1 C - 12 A vs. C 0.25 (A) 0.425 (A) >1 (-) 0 (-) >0.05
rs76556746 chr6:31109119 CCHCR1 [-1097bp] C - 12 A vs. G - - <1 (-) 20 (-) >0.05
rs141424817 chr6:31179547 HCG27 [+7802bp] C - 6 A vs. T - - <1 (-) 0 (-) >0.05
rs9263931 chr6:31178547 HCG27 [+6802bp] C - 12 A vs. G - 0.392 (G) >1 (-) 0 (-) >0.05
rs11755601 chr6:31100247 PSORS1C1 C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs144098353 chr6:31173833 HCG27 [+2088bp] C - 6 A vs. T - - <1 (-) 0 (-) >0.05
rs61283711 chr6:31178203 HCG27 [+6458bp] C - 12 T vs. C 0.033 (C) 0.208 (C) <1 (-) 37 (-) >0.05
rs9263960 chr6:31184877 HCG27 [+13132bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs6903896 chr6:31168029 HCG27 C - 12 A vs. G 0.033 (A) 0.1 (A) >1 (-) 37 (-) >0.05
rs13196034 chr6:31098210 PSORS1C1 C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs9263956 chr6:31182971 HCG27 [+11226bp] C - 12 T vs. C 0.458 (C) 0.433 (T) >1 (-) 0 (-) >0.05
rs9263716 chr6:31095816 PSORS1C1 C - 11 A vs. T 0.125 (T) 0.358 (T) >1 (-) 0 (-) >0.05
rs9263964 chr6:31186039 HCG27 [+14294bp] C - 12 T vs. C 0.45 (C) 0.45 (T) >1 (-) 0 (-) >0.05
rs9263855 chr6:31156994 POU5F1 [+8486bp] C - 11 T vs. G - - <1 (-) 0 (-) >0.05
rs1265044 chr6:31090318 PSORS1C1 C - 9 T vs. C - - >1 (-) 29 (-) >0.05
rs9263903 chr6:31175081 HCG27 [+3336bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs13200022 chr6:31098957 PSORS1C1 C - 12 T vs. C 0.108 (T) 0.192 (T) >1 (-) 0 (-) >0.05
rs28742574 chr6:31164294 HCG27 [-1243bp] C - 11 A vs. G - - >1 (-) 0 (-) >0.05
rs885701 chr6:31143900 POU5F1 C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs364786 chr6:31144291 POU5F1 C - 12 T vs. G - - >1 (-) 0 (-) >0.05
rs28732098 chr6:31091054 PSORS1C1 C - 12 T vs. C 0.025 (T) - >1 (-) 0 (-) >0.05
rs3869109 chr6:31184196 HCG27 [+12451bp] C - 12 A vs. G 0.45 (A) 0.45 (G) >1 (-) 0 (-) >0.05
rs13212168 chr6:31098193 PSORS1C1 C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs76061950 chr6:31154878 POU5F1 [+6370bp] C - 12 A vs. G - - <1 (-) 38 (-) >0.05
rs1793899 chr6:31170131 HCG27 C - 12 A vs. G 0.008 (A) - <1 (-) 0 (-) >0.05
rs6932086 chr6:31095088 PSORS1C1 C - 12 A vs. G 0.067 (A) 0.233 (A) <1 (-) 0 (-) >0.05
rs9501055 chr6:31097052 PSORS1C1 C - 12 A vs. G 0.108 (A) 0.192 (A) <1 (-) 0 (-) >0.05
rs1265161 chr6:31137660 POU5F1 C - 12 A vs. G 0.008 (A) - >1 (-) 0 (-) >0.05
rs1345274 chr6:31190627 HCG27 [+18882bp] C - 12 C vs. G - - <1 (-) 0 (-) >0.05
rs1265183 chr6:31153147 POU5F1 [+4639bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs1265182 chr6:31153904 POU5F1 [+5396bp] C - 12 T vs. G - - >1 (-) 0 (-) >0.05
rs138864366 chr6:31168702 HCG27 C - 5 C vs. G - - <1 (-) 20 (-) >0.05
rs1265180 chr6:31159345 HCG27 [-6192bp] C - 12 A vs. C 0.008 (A) - >1 (-) 0 (-) >0.05
rs1265184 chr6:31151762 POU5F1 [+3254bp] C - 12 A vs. G 0.008 (A) - >1 (-) 0 (-) >0.05
rs1634703 chr6:31185262 HCG27 [+13517bp] C - 12 A vs. G 0.008 (A) - <1 (-) 0 (-) >0.05
rs6901657 chr6:31121600 CCHCR1 C - 12 T vs. C - - <1 (-) 42 (-) >0.05
rs1620471 chr6:31188607 HCG27 [+16862bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs3871247 chr6:31145702 POU5F1 C - 12 A vs. G 0.3 (A) 0.483 (G) <1 (-) 0 (-) >0.05
rs9263986 chr6:31191070 HCG27 [+19325bp] C - 12 A vs. G 0.45 (A) 0.458 (A) >1 (-) 0 (-) >0.05
rs9468872 chr6:31101849 PSORS1C1 C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs28362340 chr6:31165359 HCG27 [-178bp] C - 5 C vs. G 0.075 (C) 0.067 (C) <1 (-) 0 (-) >0.05
rs2073720 chr6:31112823 CCHCR1 C - 3 T vs. C - 0.117 (C) <1 (-) 0 (-) >0.05

Association studies for this region [+]