POU5F1, chr6:31132119-31148508 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9461648 chr6:31142719 POU5F1 C - 12 T vs. C 0.092 (C) 0.125 (C) <1 (-) 14 (-) <0.05
rs9468877 chr6:31142903 POU5F1 C - 12 A vs. G 0.108 (A) 0.125 (A) >1 (-) 14 (-) <0.05
rs9461649 chr6:31143158 POU5F1 C - 12 T vs. C 0.108 (T) 0.125 (T) >1 (-) 14 (-) <0.05
rs4343960 chr6:31156606 POU5F1 [+8098bp] C - 12 A vs. C 0.192 (A) 0.167 (A) >1 (-) 31 (-) <0.05
rs9468885 chr6:31151413 POU5F1 [+2905bp] C - 12 A vs. C - - <1 (-) 0 (-) <0.05
rs9461650 chr6:31143241 POU5F1 C - 12 A vs. G 0.108 (A) 0.2 (A) >1 (-) 24 (-) <0.05
rs9468879 chr6:31143249 POU5F1 C - 12 A vs. C 0.108 (A) 0.125 (A) >1 (-) 24 (-) <0.05
rs2073721 chr6:31129616 TCF19 C - 10 A vs. G 0.283 (A) 0.392 (A) >1 (-) 0 (-) <0.05
rs3130502 chr6:31136666 POU5F1 All: C 103,235 14 A vs. G 0.283 (A) 0.392 (A) 1.05 (1.02-1.09) 0 (0-35) 0.006
rs9264042 chr6:31196801 HCG27 [+25056bp] C - 12 A vs. G 0.058 (A) 0.05 (A) >1 (-) 15 (-) <0.05
rs3095237 chr6:31161347 HCG27 [-4190bp] C - 12 A vs. G 0.192 (A) 0.158 (A) >1 (-) 29 (-) <0.05
rs3130520 chr6:31195120 HCG27 [+23375bp] C - 12 T vs. C 0.192 (T) 0.25 (T) >1 (-) 31 (-) <0.05
rs3130460 chr6:31160188 HCG27 [-5349bp] C - 12 A vs. G - - >1 (-) 28 (-) <0.05
rs3095238 chr6:31161210 HCG27 [-4327bp] C - 12 T vs. G 0.192 (T) 0.158 (T) >1 (-) 28 (-) <0.05
rs4713441 chr6:31155284 POU5F1 [+6776bp] C - 12 A vs. T - - >1 (-) 35 (-) <0.05
rs3094189 chr6:31141970 POU5F1 C - 12 A vs. C 0.175 (C) 0.05 (C) <1 (-) 28 (-) <0.05
rs11507946 chr6:31145733 POU5F1 C - 11 A vs. T - - <1 (-) 0 (-) <0.05
rs3130954 chr6:31172937 HCG27 [+1192bp] C - 12 A vs. G 0.175 (G) 0.033 (G) <1 (-) 29 (-) <0.05
rs3094663 chr6:31107087 PSORS1C1 C - 11 T vs. C 0.308 (T) 0.35 (T) >1 (-) 0 (-) <0.05
rs3134782 chr6:31197633 HCG27 [+25888bp] C - 12 A vs. G 0.192 (G) 0.25 (G) <1 (-) 28 (-) <0.05
rs3095252 chr6:31194747 HCG27 [+23002bp] C - 12 A vs. G 0.192 (G) 0.175 (G) <1 (-) 28 (-) <0.05
rs3132507 chr6:31175613 HCG27 [+3868bp] C - 12 A vs. C 0.192 (A) - >1 (-) 26 (-) <0.05
rs3734869 chr6:31143639 POU5F1 C - 12 A vs. G 0.133 (A) 0.133 (A) >1 (-) 0 (-) <0.05
rs3134789 chr6:31144695 POU5F1 C - 12 T vs. C 0.192 (T) - >1 (-) 28 (-) <0.05
rs3869112 chr6:31197815 HCG27 [+26070bp] C - 12 C vs. G - - <1 (-) 13 (-) <0.05
rs3131017 chr6:31147081 POU5F1 C - 12 T vs. C 0.192 (C) 0.175 (C) <1 (-) 29 (-) <0.05
rs3130941 chr6:31197514 HCG27 [+25769bp] C - 12 C vs. G 0.192 (C) 0.242 (C) >1 (-) 27 (-) <0.05
rs150984561 chr6:31169477 HCG27 C - 12 A vs. G - - >1 (-) 22 (-) <0.05
rs9500880 chr6:31159728 HCG27 [-5809bp] C - 12 A vs. G - - >1 (-) 7 (-) <0.05
rs7774136 chr6:31196478 HCG27 [+24733bp] C - 12 C vs. G 0.058 (C) 0.05 (C) >1 (-) 13 (-) <0.05
rs9264020 chr6:31195476 HCG27 [+23731bp] C - 12 C vs. G 0.058 (G) 0.05 (G) <1 (-) 13 (-) <0.05
rs9264021 chr6:31195485 HCG27 [+23740bp] C - 12 T vs. C 0.058 (T) 0.05 (T) >1 (-) 13 (-) <0.05
rs115374779 chr6:31164727 HCG27 [-810bp] C - 12 T vs. C 0.033 (T) 0.092 (T) >1 (-) 21 (-) <0.05
rs114141192 chr6:31165843 HCG27 C - 12 T vs. C 0.033 (T) 0.092 (T) >1 (-) 21 (-) <0.05
rs4122190 chr6:31167852 HCG27 C - 12 A vs. G - 0.133 (G) >1 (-) 0 (-) <0.05
rs28483421 chr6:31167470 HCG27 C - 12 T vs. C - 0.133 (T) <1 (-) 0 (-) <0.05
rs3132500 chr6:31188611 HCG27 [+16866bp] C - 12 T vs. G - - >1 (-) 15 (-) <0.05
rs28749551 chr6:31163972 HCG27 [-1565bp] C - 12 C vs. G - - <1 (-) 44 (-) <0.05
rs3132504 chr6:31178743 HCG27 [+6998bp] C - 12 T vs. G 0.2 (T) 0.158 (T) >1 (-) 27 (-) <0.05
rs3132501 chr6:31185977 HCG27 [+14232bp] C - 12 T vs. G 0.208 (T) 0.167 (T) >1 (-) 28 (-) <0.05
rs3130951 chr6:31186868 HCG27 [+15123bp] C - 12 T vs. C - - >1 (-) 28 (-) <0.05
rs9366770 chr6:31170228 HCG27 C - 12 C vs. G 0.358 (C) 0.467 (G) <1 (-) 3 (-) <0.05
rs3130950 chr6:31189952 HCG27 [+18207bp] C - 12 C vs. G - - >1 (-) 28 (-) <0.05
rs3130466 chr6:31179932 HCG27 [+8187bp] C - 12 C vs. G 0.192 (G) 0.158 (G) <1 (-) 26 (-) <0.05
rs6922077 chr6:31163791 HCG27 [-1746bp] C - 12 C vs. G 0.192 (C) 0.392 (C) <1 (-) 33 (-) <0.05
rs62987162 chr6:31167696 HCG27 C - 12 C vs. G - - <1 (-) 32 (-) <0.05
rs3094193 chr6:31137774 POU5F1 C - 12 T vs. G 0.467 (G) 0.4 (G) <1 (-) 15 (-) <0.05
rs28749550 chr6:31159911 HCG27 [-5626bp] C - 12 A vs. G 0.175 (G) 0.25 (G) >1 (-) 40 (-) <0.05
rs3132508 chr6:31174796 HCG27 [+3051bp] C - 12 T vs. G - - <1 (-) 29 (-) <0.05
rs3131012 chr6:31115441 CCHCR1 C - 12 T vs. C 0.483 (T) 0.467 (T) >1 (-) 0 (-) <0.05

Association studies for this region [+]