POU5F1, chr6:31132119-31148508 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region
Append your own data and create meta-analysis

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3130518 chr6:31191709 HCG27 [+19964bp] C - 12 T vs. C - - >1 (-) 28 (-) <0.05
rs2240064 chr6:31114573 CCHCR1 C - 12 A vs. G 0.483 (G) 0.45 (G) <1 (-) 0 (-) <0.05
rs915660 chr6:31143835 POU5F1 C - 12 C vs. G 0.175 (G) 0.375 (G) >1 (-) 39 (-) <0.05
rs3132533 chr6:31117578 CCHCR1 C - 12 A vs. G 0.458 (A) 0.433 (A) >1 (-) 16 (-) <0.05
rs9264024 chr6:31195828 HCG27 [+24083bp] C - 12 A vs. G - - >1 (-) 20 (-) <0.05
rs9501350 chr6:31152839 POU5F1 [+4331bp] C - 12 T vs. C - 0.025 (T) >1 (-) 5 (-) <0.05
rs7772153 chr6:31154261 POU5F1 [+5753bp] C - 11 A vs. G - 0.133 (A) <1 (-) 0 (-) <0.05
rs7771486 chr6:31153886 POU5F1 [+5378bp] C - 11 C vs. G - 0.125 (C) <1 (-) 0 (-) <0.05
rs148870053 chr6:31115164 CCHCR1 C - 12 A vs. G - - >1 (-) 0 (-) <0.05
rs9405015 chr6:31155803 POU5F1 [+7295bp] C - 11 T vs. C - 0.133 (T) <1 (-) 0 (-) <0.05
rs9368660 chr6:31155944 POU5F1 [+7436bp] C - 11 A vs. G - - <1 (-) 0 (-) <0.05
rs9348855 chr6:31151808 POU5F1 [+3300bp] C - 11 A vs. C - 0.133 (C) >1 (-) 0 (-) <0.05
rs9378226 chr6:31158050 HCG27 [-7487bp] C - 11 A vs. G - 0.117 (G) >1 (-) 0 (-) <0.05
rs9357114 chr6:31149298 POU5F1 [+790bp] C - 11 T vs. G - 0.133 (G) >1 (-) 0 (-) <0.05
rs9357112 chr6:31148859 POU5F1 [+351bp] C - 11 A vs. G - - >1 (-) 0 (-) <0.05
rs1265099 chr6:31105413 PSORS1C1 C - 12 A vs. G 0.375 (G) 0.483 (A) >1 (-) 38 (-) <0.05
rs4713439 chr6:31147026 POU5F1 C - 11 A vs. G - 0.133 (G) >1 (-) 0 (-) <0.05
rs117672584 chr6:31151810 POU5F1 [+3302bp] C - 12 A vs. G - 0.092 (A) >1 (-) 11 (-) <0.05
rs56205037 chr6:31120768 CCHCR1 C - 12 T vs. C 0.075 (T) 0.042 (T) >1 (-) 28 (-) <0.05
rs117960312 chr6:31151761 POU5F1 [+3253bp] C - 12 T vs. C - 0.092 (T) >1 (-) 10 (-) <0.05
rs3130456 chr6:31126252 TCF19 [-67bp] C - 12 A vs. C 0.458 (C) 0.425 (C) <1 (-) 24 (-) <0.05
rs3132517 chr6:31141836 POU5F1 C - 12 T vs. C 0.25 (C) 0.167 (C) <1 (-) 0 (-) <0.05
rs2073717 chr6:31122126 CCHCR1 C - 12 C vs. G 0.458 (G) 0.433 (G) <1 (-) 18 (-) <0.05
rs114475062 chr6:31127745 TCF19 C - 12 A vs. C 0.042 (A) 0.033 (A) >1 (-) 0 (-) <0.05
rs743401 chr6:31125158 CCHCR1 C - 11 T vs. C 0.458 (C) 0.425 (C) <1 (-) 29 (-) <0.05
rs17190769 chr6:31127037 TCF19 C - 12 T vs. C 0.033 (T) 0.092 (T) >1 (-) 0 (-) <0.05
rs2239524 chr6:31125569 CCHCR1 C - 11 T vs. G 0.475 (T) 0.425 (T) >1 (-) 29 (-) <0.05
rs9378227 chr6:31163582 HCG27 [-1955bp] C - 12 C vs. G - - >1 (-) 32 (-) <0.05
rs9263761 chr6:31116739 CCHCR1 C - 12 A vs. G - - >1 (-) 0 (-) <0.05
rs7769211 chr6:31196018 HCG27 [+24273bp] C - 12 T vs. C - - >1 (-) 0 (-) <0.05
rs2240063 chr6:31114745 CCHCR1 C - 12 T vs. C 0.483 (T) 0.442 (T) >1 (-) 0 (-) <0.05
rs3132520 chr6:31140008 POU5F1 C - 12 T vs. C 0.483 (T) 0.375 (T) <1 (-) 0 (-) <0.05
rs3132539 chr6:31113030 CCHCR1 C - 12 A vs. G 0.25 (A) 0.208 (A) >1 (-) 0 (-) <0.05
rs7769059 chr6:31195996 HCG27 [+24251bp] C - 12 A vs. G - - <1 (-) 0 (-) <0.05
rs7768955 chr6:31195979 HCG27 [+24234bp] C - 12 A vs. G - - <1 (-) 0 (-) <0.05
rs3132538 chr6:31113842 CCHCR1 C - 12 A vs. G 0.25 (A) 0.175 (A) >1 (-) 0 (-) <0.05
rs3130503 chr6:31137165 POU5F1 C - 12 A vs. G 0.25 (A) 0.3 (A) >1 (-) 0 (-) <0.05
rs3132540 chr6:31109943 CCHCR1 [-273bp] C - 12 A vs. G 0.258 (A) 0.175 (A) >1 (-) 0 (-) <0.05
rs3130522 chr6:31196840 HCG27 [+25095bp] C - 12 T vs. C 0.225 (C) 0.342 (C) >1 (-) 0 (-) <0.05
rs114263479 chr6:31136575 POU5F1 C - 12 T vs. C 0.075 (C) 0.033 (C) <1 (-) 22 (-) <0.05
rs3130943 chr6:31196847 HCG27 [+25102bp] C - 12 A vs. G 0.225 (G) 0.367 (G) >1 (-) 0 (-) <0.05
rs2269712 chr6:31141209 POU5F1 C - 12 A vs. G 0.267 (A) 0.283 (A) >1 (-) 0 (-) <0.05
rs2233942 chr6:31107904 PSORS1C1 [+35bp] C - 12 C vs. G 0.258 (C) 0.225 (C) >1 (-) 0 (-) <0.05
rs3094227 chr6:31117378 CCHCR1 C - 12 A vs. C 0.283 (A) 0.342 (A) >1 (-) 0 (-) <0.05
rs2233941 chr6:31107916 PSORS1C1 [+47bp] C - 12 C vs. G - - >1 (-) 0 (-) <0.05
rs9263788 chr6:31128259 TCF19 C - 12 A vs. G - - >1 (-) 0 (-) <0.05
rs114345219 chr6:31107209 PSORS1C1 C - 12 A vs. G 0.033 (A) 0.017 (C) >1 (-) 0 (-) <0.05
rs12529697 chr6:31125407 CCHCR1 C - 12 A vs. G 0.075 (A) 0.033 (A) >1 (-) 26 (-) <0.05
rs2240065 chr6:31114449 CCHCR1 C - 12 T vs. C 0.242 (C) 0.308 (C) <1 (-) 0 (-) <0.05
rs10947158 chr6:31195616 HCG27 [+23871bp] C - 10 A vs. G - 0.125 (A) <1 (-) 0 (-) <0.05

Association studies for this region [+]