POU5F1, chr6:31132119-31148508 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9263847 chr6:31156086 POU5F1 [+7578bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs2239523 chr6:31089507 PSORS1C1 C - 12 C vs. G 0.283 (C) 0.125 (C) >1 (-) 4 (-) >0.05
rs1265098 chr6:31106177 PSORS1C1 C - 12 T vs. C 0.225 (C) 0.083 (C) >1 (-) 20 (-) >0.05
rs3132551 chr6:31085882 PSORS1C1 C - 12 A vs. G 0.283 (A) 0.217 (A) >1 (-) 1 (-) >0.05
rs3208498 chr6:31154421 POU5F1 [+5913bp] C - 12 T vs. C - - >1 (-) 26 (-) >0.05
rs3094190 chr6:31140073 POU5F1 C - 12 A vs. G 0.467 (G) 0.442 (G) <1 (-) 9 (-) >0.05
rs3132502 chr6:31183509 HCG27 [+11764bp] C - 12 A vs. G 0.242 (A) 0.383 (A) <1 (-) 5 (-) >0.05
rs12526142 chr6:31160116 HCG27 [-5421bp] C - 12 T vs. C 0.025 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs3132519 chr6:31140088 POU5F1 C - 12 T vs. C 0.483 (C) 0.433 (T) >1 (-) 9 (-) >0.05
rs3132518 chr6:31140169 POU5F1 C - 12 C vs. G 0.483 (C) 0.408 (C) >1 (-) 11 (-) >0.05
rs3130949 chr6:31191867 HCG27 [+20122bp] C - 12 T vs. C - 0.125 (T) <1 (-) 0 (-) >0.05
rs3132552 chr6:31085269 PSORS1C1 C - 12 A vs. G 0.283 (A) 0.125 (A) >1 (-) 2 (-) >0.05
rs1061118 chr6:31132414 TCF19 C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs1265094 chr6:31106893 PSORS1C1 C - 12 A vs. G 0.5 (G) 0.358 (G) >1 (-) 0 (-) >0.05
rs3095323 chr6:31087240 PSORS1C1 C - 12 T vs. C 0.283 (C) 0.217 (C) <1 (-) 2 (-) >0.05
rs55938644 chr6:31161856 HCG27 [-3681bp] C - 12 T vs. C 0.075 (C) - <1 (-) 27 (-) >0.05
rs2394882 chr6:31132649 TCF19 C - 12 A vs. C 0.35 (A) 0.425 (A) >1 (-) 0 (-) >0.05
rs3095319 chr6:31088037 PSORS1C1 C - 12 T vs. C 0.3 (T) 0.225 (T) >1 (-) 3 (-) >0.05
rs3132547 chr6:31087908 PSORS1C1 C - 12 T vs. G 0.283 (T) 0.208 (T) >1 (-) 3 (-) >0.05
rs3095322 chr6:31087441 PSORS1C1 C - 12 T vs. C - - >1 (-) 2 (-) >0.05
rs3132549 chr6:31086849 PSORS1C1 C - 12 A vs. G - - >1 (-) 1 (-) >0.05
rs3132548 chr6:31086884 PSORS1C1 C - 12 A vs. G 0.283 (A) 0.125 (A) >1 (-) 1 (-) >0.05
rs3095320 chr6:31087934 PSORS1C1 C - 12 A vs. G 0.283 (G) 0.217 (G) <1 (-) 4 (-) >0.05
rs3094211 chr6:31086402 PSORS1C1 C - 12 A vs. G 0.283 (G) 0.217 (G) <1 (-) 1 (-) >0.05
rs3094209 chr6:31089982 PSORS1C1 C - 12 A vs. G 0.283 (A) 0.117 (A) >1 (-) 8 (-) >0.05
rs3095321 chr6:31087496 PSORS1C1 C - 12 A vs. G - - <1 (-) 2 (-) >0.05
rs3132553 chr6:31085200 PSORS1C1 C - 12 A vs. G 0.283 (A) 0.125 (A) >1 (-) 3 (-) >0.05
rs3130467 chr6:31187075 HCG27 [+15330bp] C - 12 T vs. C 0.258 (T) 0.35 (T) <1 (-) 0 (-) >0.05
rs149323436 chr6:31106689 PSORS1C1 C - 7 A vs. G - - >1 (-) 0 (-) >0.05
rs6914710 chr6:31175284 HCG27 [+3539bp] C - 12 A vs. G - - <1 (-) 23 (-) >0.05
rs6914706 chr6:31175275 HCG27 [+3530bp] C - 12 A vs. G - - <1 (-) 23 (-) >0.05
rs1265081 chr6:31111675 CCHCR1 C - 12 A vs. C 0.5 (A) 0.317 (A) <1 (-) 0 (-) >0.05
rs3132545 chr6:31089125 PSORS1C1 C - 12 A vs. G 0.283 (A) 0.217 (A) >1 (-) 0 (-) >0.05
rs1265088 chr6:31109460 CCHCR1 [-756bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs1265080 chr6:31112075 CCHCR1 C - 12 A vs. G 0.492 (A) 0.358 (A) <1 (-) 0 (-) >0.05
rs6914393 chr6:31175276 HCG27 [+3531bp] C - 12 T vs. C - - <1 (-) 23 (-) >0.05
rs2302397 chr6:31088241 PSORS1C1 C - 12 T vs. C 0.283 (C) 0.2 (C) <1 (-) 0 (-) >0.05
rs28617578 chr6:31159522 HCG27 [-6015bp] C - 12 T vs. C - - >1 (-) 24 (-) >0.05
rs2302398 chr6:31088232 PSORS1C1 C - 12 A vs. G 0.292 (A) 0.208 (A) >1 (-) 0 (-) >0.05
rs2302396 chr6:31088325 PSORS1C1 C - 12 A vs. G 0.317 (A) 0.225 (A) >1 (-) 0 (-) >0.05
rs9295964 chr6:31169538 HCG27 C - 12 C vs. G - - >1 (-) 0 (-) >0.05
rs17191181 chr6:31171876 HCG27 [+131bp] C - 12 T vs. C 0.183 (T) 0.242 (T) <1 (-) 25 (-) >0.05
rs9501508 chr6:31163094 HCG27 [-2443bp] C - 12 T vs. C - - >1 (-) 25 (-) >0.05
rs9461657 chr6:31162648 HCG27 [-2889bp] C - 12 A vs. C 0.075 (A) 0.033 (A) >1 (-) 25 (-) >0.05
rs746646 chr6:31113940 CCHCR1 C - 12 T vs. C 0.292 (C) 0.075 (C) >1 (-) 0 (-) >0.05
rs11970124 chr6:31153916 POU5F1 [+5408bp] C - 12 A vs. G 0.033 (A) 0.033 (A) >1 (-) 21 (-) >0.05
rs3130953 chr6:31177094 HCG27 [+5349bp] C - 12 A vs. G 0.267 (A) 0.392 (A) <1 (-) 0 (-) >0.05
rs746647 chr6:31114182 CCHCR1 C - 12 A vs. G 0.292 (G) 0.075 (G) >1 (-) 0 (-) >0.05
rs885948 chr6:31140532 POU5F1 C - 12 A vs. G 0.475 (G) 0.45 (G) >1 (-) 26 (-) >0.05
rs9468880 chr6:31150858 POU5F1 [+2350bp] C - 12 A vs. G - 0.017 (A) >1 (-) 19 (-) >0.05

Association studies for this region [+]