POU5F1, chr6:31132119-31148508 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs12527342 chr6:31158505 HCG27 [-7032bp] C - 12 T vs. C 0.067 (C) 0.033 (C) <1 (-) 22 (-) >0.05
rs60107636 chr6:31156698 POU5F1 [+8190bp] C - 12 T vs. C - - >1 (-) 22 (-) >0.05
rs9461652 chr6:31155187 POU5F1 [+6679bp] C - 12 A vs. G 0.075 (A) 0.033 (A) >1 (-) 22 (-) >0.05
rs11961945 chr6:31151248 POU5F1 [+2740bp] C - 12 A vs. G - - <1 (-) 40 (-) >0.05
rs28749548 chr6:31150914 POU5F1 [+2406bp] C - 12 A vs. T - - <1 (-) 40 (-) >0.05
rs60851386 chr6:31161404 HCG27 [-4133bp] C - 12 T vs. C 0.075 (T) 0.033 (T) >1 (-) 23 (-) >0.05
rs9295959 chr6:31159041 HCG27 [-6496bp] C - 12 A vs. G - - >1 (-) 22 (-) >0.05
rs2894181 chr6:31174527 HCG27 [+2782bp] C - 12 A vs. G 0.492 (G) 0.367 (G) >1 (-) 0 (-) >0.05
rs17197375 chr6:31154040 POU5F1 [+5532bp] C - 12 T vs. C 0.05 (T) 0.033 (T) >1 (-) 21 (-) >0.05
rs3132505 chr6:31177503 HCG27 [+5758bp] C - 12 T vs. G 0.233 (T) 0.167 (T) <1 (-) 0 (-) >0.05
rs9468881 chr6:31150870 POU5F1 [+2362bp] C - 12 T vs. C - - >1 (-) 21 (-) >0.05
rs4711258 chr6:31150383 POU5F1 [+1875bp] C - 12 A vs. G 0.067 (A) - >1 (-) 21 (-) >0.05
rs9468887 chr6:31151690 POU5F1 [+3182bp] C - 12 C vs. G - - <1 (-) 21 (-) >0.05
rs4713445 chr6:31161000 HCG27 [-4537bp] C - 12 A vs. G - - >1 (-) 22 (-) >0.05
rs9461653 chr6:31160553 HCG27 [-4984bp] C - 12 A vs. G 0.075 (G) 0.033 (G) <1 (-) 22 (-) >0.05
rs12529498 chr6:31160211 HCG27 [-5326bp] C - 12 A vs. G - - <1 (-) 22 (-) >0.05
rs6914030 chr6:31175096 HCG27 [+3351bp] C - 12 T vs. C - - <1 (-) 33 (-) >0.05
rs3887153 chr6:31176461 HCG27 [+4716bp] C - 12 T vs. C 0.175 (T) 0.242 (T) <1 (-) 27 (-) >0.05
rs17191237 chr6:31176160 HCG27 [+4415bp] C - 12 A vs. T 0.175 (A) 0.242 (A) <1 (-) 27 (-) >0.05
rs9501070 chr6:31164224 HCG27 [-1313bp] C - 12 C vs. G 0.075 (G) 0.025 (G) <1 (-) 24 (-) >0.05
rs3130511 chr6:31176948 HCG27 [+5203bp] C - 12 T vs. C 0.258 (T) 0.358 (T) <1 (-) 5 (-) >0.05
rs1265086 chr6:31109882 CCHCR1 [-334bp] C - 12 T vs. G 0.5 (G) 0.358 (T) <1 (-) 0 (-) >0.05
rs9501505 chr6:31152734 POU5F1 [+4226bp] C - 12 A vs. G - - <1 (-) 21 (-) >0.05
rs3134785 chr6:31179193 HCG27 [+7448bp] C - 12 A vs. G 0.233 (A) 0.175 (A) <1 (-) 0 (-) >0.05
rs1265067 chr6:31116142 CCHCR1 C - 12 A vs. G 0.3 (A) 0.067 (A) <1 (-) 0 (-) >0.05
rs3130978 chr6:31082188 PSORS1C1 [-339bp] C - 12 A vs. G 0.375 (A) 0.2 (A) <1 (-) 0 (-) >0.05
rs78429324 chr6:31166239 HCG27 C - 12 T vs. C 0.05 (T) 0.025 (T) >1 (-) 24 (-) >0.05
rs1265114 chr6:31117188 CCHCR1 C - 12 T vs. C 0.292 (T) 0.075 (T) <1 (-) 0 (-) >0.05
rs1265112 chr6:31118019 CCHCR1 C - 12 T vs. C 0.292 (C) 0.075 (C) >1 (-) 0 (-) >0.05
rs3132506 chr6:31176226 HCG27 [+4481bp] C - 12 T vs. C 0.225 (C) 0.175 (C) >1 (-) 0 (-) >0.05
rs3134783 chr6:31197263 HCG27 [+25518bp] C - 12 A vs. G 0.25 (A) 0.367 (A) <1 (-) 0 (-) >0.05
rs74372121 chr6:31164116 HCG27 [-1421bp] C - 4 C vs. G - - <1 (-) 0 (-) >0.05
rs3130979 chr6:31082197 PSORS1C1 [-330bp] C - 12 C vs. G 0.375 (C) 0.208 (C) <1 (-) 0 (-) >0.05
rs3132546 chr6:31088579 PSORS1C1 C - 12 A vs. G 0.283 (A) 0.125 (A) >1 (-) 0 (-) >0.05
rs9295961 chr6:31167498 HCG27 C - 12 T vs. C 0.075 (C) 0.033 (C) <1 (-) 23 (-) >0.05
rs1265111 chr6:31119380 CCHCR1 C - 12 A vs. G 0.292 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs1265079 chr6:31112108 CCHCR1 C - 12 T vs. G 0.292 (T) 0.075 (T) <1 (-) 0 (-) >0.05
rs886389 chr6:31166887 HCG27 C - 12 T vs. G 0.075 (T) - >1 (-) 23 (-) >0.05
rs1265069 chr6:31115700 CCHCR1 C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs1265076 chr6:31113083 CCHCR1 C - 12 A vs. G 0.292 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs140174668 chr6:31168842 HCG27 C - 12 T vs. C - - >1 (-) 21 (-) >0.05
rs3130469 chr6:31196336 HCG27 [+24591bp] C - 12 A vs. T 0.35 (T) 0.258 (T) <1 (-) 48 (-) >0.05
rs3130947 chr6:31195365 HCG27 [+23620bp] C - 12 T vs. G 0.333 (G) 0.258 (G) <1 (-) 48 (-) >0.05
rs3130939 chr6:31198507 HCG27 [+26762bp] C - 12 A vs. G 0.333 (A) 0.258 (A) >1 (-) 48 (-) >0.05
rs6905862 chr6:31127602 TCF19 C - 12 A vs. G 0.417 (A) 0.342 (A) <1 (-) 0 (-) >0.05
rs3130552 chr6:31082127 PSORS1C1 [-400bp] C - 12 A vs. G 0.317 (A) 0.2 (A) <1 (-) 0 (-) >0.05
rs9468889 chr6:31155385 POU5F1 [+6877bp] C - 12 T vs. G - - <1 (-) 25 (-) >0.05
rs1265078 chr6:31112602 CCHCR1 C - 12 C vs. G 0.292 (C) 0.075 (C) <1 (-) 0 (-) >0.05
rs3130519 chr6:31195097 HCG27 [+23352bp] C - 12 T vs. C 0.333 (T) 0.267 (T) >1 (-) 49 (-) >0.05
rs6913470 chr6:31174662 HCG27 [+2917bp] C - 12 A vs. G - - <1 (-) 7 (-) >0.05

Association studies for this region [+]