VPS16, chr20:2821349-2847378 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
Meta_image?name=rs7268763

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6132989 chr20:2894780 PTPRA C - 10 A vs. G 0.008 (G) 0.067 (G) >1 (-) 5 (-) <0.05
rs79628619 chr20:2894183 PTPRA C - 10 T vs. C - 0.083 (T) <1 (-) 5 (-) <0.05
rs140551728 chr20:2884193 PTPRA C - 10 T vs. C - - <1 (-) 5 (-) <0.05
rs6138946 chr20:2894812 PTPRA C - 10 A vs. G 0.008 (G) 0.083 (G) >1 (-) 5 (-) <0.05
rs6132983 chr20:2883617 PTPRA C - 10 T vs. C - 0.108 (C) >1 (-) 5 (-) <0.05
rs67891794 chr20:2889292 PTPRA C - 13 A vs. G - 0.258 (G) >1 (-) 0 (-) <0.05
rs215543 chr20:2780151 CPXM1 C - 13 A vs. G 0.2 (G) 0.417 (G) >1 (-) 0 (-) <0.05
rs74582408 chr20:2856185 PTPRA C - 10 A vs. G - 0.1 (A) <1 (-) 0 (-) <0.05
rs6138933 chr20:2880974 PTPRA C - 10 A vs. G 0.017 (G) 0.108 (G) >1 (-) 7 (-) <0.05
rs6132987 chr20:2889403 PTPRA C - 10 A vs. G 0.017 (G) 0.108 (G) >1 (-) 6 (-) <0.05
rs6138934 chr20:2881696 PTPRA C - 10 T vs. C - - >1 (-) 7 (-) <0.05
rs74728466 chr20:2880193 PTPRA C - 10 T vs. G 0.017 (T) 0.108 (T) <1 (-) 7 (-) <0.05
rs1016753 chr20:2889720 PTPRA C - 10 C vs. G - 0.108 (G) >1 (-) 6 (-) <0.05
rs6132985 chr20:2885059 PTPRA C - 10 A vs. G - - >1 (-) 7 (-) <0.05
rs6138940 chr20:2887389 PTPRA C - 10 T vs. C 0.017 (C) 0.108 (C) >1 (-) 6 (-) <0.05
rs6132986 chr20:2888235 PTPRA C - 10 A vs. G - 0.108 (G) >1 (-) 6 (-) <0.05
rs6138944 chr20:2893781 PTPRA C - 10 A vs. G 0.017 (A) - <1 (-) 6 (-) <0.05
rs61004655 chr20:2886699 PTPRA C - 10 T vs. G - 0.108 (T) <1 (-) 6 (-) <0.05
rs117848318 chr20:2892686 PTPRA C - 10 T vs. C 0.017 (T) 0.108 (T) <1 (-) 6 (-) <0.05
rs79473014 chr20:2886296 PTPRA C - 10 A vs. G 0.017 (A) 0.092 (A) <1 (-) 6 (-) <0.05
rs6132984 chr20:2885032 PTPRA C - 10 A vs. G - 0.108 (A) <1 (-) 7 (-) <0.05
rs6138945 chr20:2893881 PTPRA C - 10 C vs. G 0.017 (C) 0.092 (C) <1 (-) 6 (-) <0.05
rs6138936 chr20:2882140 PTPRA C - 10 T vs. C - 0.108 (T) <1 (-) 7 (-) <0.05
rs76478289 chr20:2882261 PTPRA C - 10 A vs. T 0.008 (A) 0.092 (A) <1 (-) 7 (-) <0.05
rs115603586 chr20:2882687 PTPRA C - 10 A vs. G - 0.108 (G) >1 (-) 7 (-) <0.05
rs75001408 chr20:2894095 PTPRA C - 10 T vs. C - 0.108 (T) <1 (-) 6 (-) <0.05
rs114572200 chr20:2884772 PTPRA C - 10 A vs. G 0.008 (A) 0.083 (A) <1 (-) 7 (-) <0.05
rs6138939 chr20:2884204 PTPRA C - 10 T vs. C 0.017 (C) 0.108 (C) >1 (-) 7 (-) <0.05
rs6138938 chr20:2882947 PTPRA C - 10 T vs. C - 0.108 (C) >1 (-) 7 (-) <0.05
rs672406 chr20:2885205 PTPRA C - 13 T vs. C - - <1 (-) 20 (-) <0.05
rs619450 chr20:2894790 PTPRA C - 13 T vs. C 0.5 (T) 0.242 (T) >1 (-) 20 (-) <0.05
rs215545 chr20:2782015 CPXM1 [+732bp] C - 13 T vs. C 0.2 (T) 0.417 (T) <1 (-) 0 (-) <0.05
rs7268366 chr20:2782522 CPXM1 [+1239bp] C - 13 T vs. C 0.108 (T) 0.225 (T) <1 (-) 0 (-) <0.05
rs67367303 chr20:2773790 CPXM1 [-925bp] C - 13 C vs. G 0.117 (C) 0.425 (C) <1 (-) 0 (-) <0.05
rs6138925 chr20:2864481 PTPRA C - 10 T vs. C - 0.075 (C) >1 (-) 0 (-) <0.05
rs118056770 chr20:2862746 PTPRA C - 10 A vs. G - 0.083 (G) >1 (-) 0 (-) <0.05
rs2181870 chr20:2874969 PTPRA C - 13 T vs. C 0.408 (T) 0.417 (C) <1 (-) 0 (-) <0.05
rs118114765 chr20:2863719 PTPRA C - 10 T vs. C 0.008 (T) - <1 (-) 0 (-) <0.05
rs76194999 chr20:2839920 VPS16 C - 10 C vs. G - 0.092 (G) >1 (-) 0 (-) <0.05
rs11087557 chr20:2791341 TMEM239 [-4273bp] C - 13 A vs. T 0.108 (T) 0.333 (T) >1 (-) 0 (-) <0.05
rs619498 chr20:2861394 PTPRA C - 13 T vs. C 0.342 (T) 0.467 (C) <1 (-) 19 (-) <0.05
rs76396164 chr20:2881146 PTPRA C - 10 A vs. C 0.017 (C) 0.108 (C) >1 (-) 3 (-) <0.05
rs215555 chr20:2787651 CPXM1 [+6368bp] C - 13 T vs. C - - >1 (-) 3 (-) <0.05
rs6138927 chr20:2872458 PTPRA C - 13 T vs. C 0.417 (C) 0.408 (T) >1 (-) 0 (-) <0.05
rs35458296 chr20:2877173 PTPRA C - 13 A vs. G 0.408 (A) 0.417 (G) <1 (-) 0 (-) <0.05
rs57186792 chr20:2860087 PTPRA C - 10 A vs. G - 0.083 (G) >1 (-) 0 (-) <0.05
rs6138929 chr20:2873970 PTPRA C - 13 T vs. C 0.417 (T) 0.417 (C) <1 (-) 0 (-) <0.05
rs74532464 chr20:2859440 PTPRA C - 10 A vs. G - 0.083 (A) <1 (-) 0 (-) <0.05
rs73606175 chr20:2790517 TMEM239 [-5097bp] C - 13 A vs. G 0.108 (G) 0.383 (G) >1 (-) 0 (-) <0.05
rs77380663 chr20:2847894 PTPRA C - 9 T vs. C 0.017 (C) 0.042 (C) >1 (-) 0 (-) <0.05

Association studies for this region [+]