CPXM1, chr20:2774715-2781283 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
Meta_image?name=rs7268763

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7260992 chr20:2791581 TMEM239 [-4033bp] C - 8 A vs. G - - <1 (-) 0 (-) >0.05
rs12106184 chr20:2791481 TMEM239 [-4133bp] C - 8 T vs. C - - >1 (-) 0 (-) >0.05
rs4813618 chr20:2809123 PCED1A [-6837bp] C - 13 C vs. G 0.117 (C) 0.208 (C) <1 (-) 0 (-) >0.05
rs6138893 chr20:2758094 CPXM1 [-16621bp] C - 13 T vs. G - - >1 (-) 11 (-) >0.05
rs11698079 chr20:2757335 EBF4 [+16582bp] C - 13 A vs. G - - >1 (-) 9 (-) >0.05
rs112419247 chr20:2790827 TMEM239 [-4787bp] C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs6051413 chr20:2791244 TMEM239 [-4370bp] C - 11 C vs. G - 0.158 (G) >1 (-) 0 (-) >0.05
rs6051421 chr20:2812820 PCED1A [-3140bp] C - 13 A vs. G 0.117 (G) 0.208 (G) >1 (-) 0 (-) >0.05
rs215551 chr20:2785279 CPXM1 [+3996bp] C - 13 T vs. C 0.2 (C) 0.158 (C) >1 (-) 0 (-) >0.05
rs114139830 chr20:2732532 EBF4 C - 13 C vs. G 0.108 (C) - >1 (-) 0 (-) >0.05
rs215552 chr20:2785747 CPXM1 [+4464bp] C - 13 T vs. C 0.2 (C) 0.167 (C) >1 (-) 0 (-) >0.05
rs141120138 chr20:2782913 CPXM1 [+1630bp] C - 5 A vs. G - - <1 (-) 17 (-) >0.05
rs1033519 chr20:2742668 EBF4 [+1915bp] C - 12 T vs. G 0.292 (G) 0.45 (T) <1 (-) 8 (-) >0.05
rs73892666 chr20:2730776 EBF4 C - 13 T vs. G 0.125 (T) 0.292 (T) >1 (-) 0 (-) >0.05
rs6037417 chr20:2793546 TMEM239 [-2068bp] C - 8 A vs. G - - <1 (-) 0 (-) >0.05
rs6051415 chr20:2793605 TMEM239 [-2009bp] C - 8 T vs. C - - >1 (-) 0 (-) >0.05
rs6132973 chr20:2807882 TMEM239 [+6952bp] C - 6 A vs. G - 0.058 (A) <1 (-) 23 (-) >0.05
rs127076 chr20:2778075 CPXM1 C - 12 T vs. C 0.042 (T) 0.0 (T) <1 (-) 0 (-) >0.05
rs215533 chr20:2768391 CPXM1 [-6324bp] C - 13 A vs. T 0.367 (A) 0.492 (A) <1 (-) 30 (-) >0.05
rs6515745 chr20:2794688 TMEM239 [-926bp] C - 8 A vs. G 0.017 (G) 0.225 (G) >1 (-) 0 (-) >0.05
rs75566675 chr20:2765782 CPXM1 [-8933bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs112907936 chr20:2754378 EBF4 [+13625bp] C - 13 A vs. G - - >1 (-) 3 (-) >0.05
rs2281317 chr20:2751091 EBF4 [+10338bp] C - 13 C vs. G - - >1 (-) 0 (-) >0.05
rs215538 chr20:2774629 CPXM1 [-86bp] C - 13 A vs. T 0.175 (A) 0.358 (A) <1 (-) 0 (-) >0.05
rs147223281 chr20:2763982 CPXM1 [-10733bp] C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs143179882 chr20:2790768 TMEM239 [-4846bp] C - 4 A vs. G - - >1 (-) 30 (-) >0.05
rs6138892 chr20:2755488 EBF4 [+14735bp] C - 13 T vs. C 0.225 (C) 0.125 (C) >1 (-) 4 (-) >0.05
rs2297047 chr20:2821601 PCED1A C - 13 T vs. C 0.075 (T) 0.208 (T) <1 (-) 0 (-) >0.05
rs2073125 chr20:2739583 EBF4 C - 13 T vs. C 0.333 (C) 0.358 (C) >1 (-) 0 (-) >0.05
rs127078 chr20:2775332 CPXM1 C - 13 T vs. C 0.175 (C) 0.358 (C) >1 (-) 0 (-) >0.05
rs16990611 chr20:2728570 EBF4 C - 13 A vs. G 0.125 (G) 0.292 (G) <1 (-) 0 (-) >0.05
rs215535 chr20:2769148 CPXM1 [-5567bp] C - 13 A vs. G 0.167 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs215539 chr20:2774683 CPXM1 [-32bp] C - 13 A vs. G 0.175 (A) 0.358 (A) <1 (-) 0 (-) >0.05
rs57923352 chr20:2727007 EBF4 C - 13 T vs. C 0.125 (T) 0.292 (T) >1 (-) 0 (-) >0.05
rs58941062 chr20:2726869 EBF4 C - 13 T vs. C 0.133 (T) 0.283 (T) >1 (-) 0 (-) >0.05
rs913659 chr20:2821144 PCED1A C - 13 T vs. C 0.117 (T) 0.192 (T) <1 (-) 0 (-) >0.05
rs4815542 chr20:2725727 EBF4 C - 12 A vs. G 0.35 (G) 0.183 (G) >1 (-) 0 (-) >0.05
rs79119754 chr20:2814096 PCED1A [-1864bp] C - 11 C vs. G 0.025 (G) - >1 (-) 7 (-) >0.05
rs34813851 chr20:2745077 EBF4 [+4324bp] C - 13 T vs. G 0.208 (T) 0.433 (T) <1 (-) 0 (-) >0.05
rs215544 chr20:2780734 CPXM1 C - 13 T vs. C 0.2 (C) 0.167 (C) >1 (-) 0 (-) >0.05
rs3746689 chr20:2817484 PCED1A C - 13 T vs. C 0.108 (T) 0.208 (T) <1 (-) 0 (-) >0.05
rs4813616 chr20:2747481 EBF4 [+6728bp] C - 13 T vs. C 0.208 (C) 0.45 (C) >1 (-) 0 (-) >0.05
rs3746690 chr20:2820797 PCED1A C - 13 A vs. G - 0.208 (A) <1 (-) 0 (-) >0.05
rs77363297 chr20:2766754 CPXM1 [-7961bp] C - 13 T vs. C - 0.158 (T) <1 (-) 0 (-) >0.05
rs215530 chr20:2767700 CPXM1 [-7015bp] C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs6138898 chr20:2788068 CPXM1 [+6785bp] C - 13 T vs. C 0.225 (T) 0.208 (T) <1 (-) 0 (-) >0.05
rs215537 chr20:2774605 CPXM1 [-110bp] C - 12 T vs. C 0.05 (C) - <1 (-) 0 (-) >0.05
rs215527 chr20:2766088 CPXM1 [-8627bp] C - 13 T vs. C 0.183 (T) 0.108 (T) <1 (-) 0 (-) >0.05
rs149931897 chr20:2758687 CPXM1 [-16028bp] C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs79928450 chr20:2756682 EBF4 [+15929bp] C - 13 T vs. C - 0.275 (T) <1 (-) 0 (-) >0.05

Association studies for this region [+]