CPXM1, chr20:2774715-2781283 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
Meta_image?name=rs7268763

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2274669 chr20:2816821 PCED1A C - 13 T vs. C 0.242 (T) 0.267 (T) <1 (-) 0 (-) >0.05
rs6051393 chr20:2766568 CPXM1 [-8147bp] C - 13 A vs. G 0.2 (A) 0.35 (A) <1 (-) 25 (-) >0.05
rs117501903 chr20:2738620 EBF4 C - 3 T vs. C 0.017 (C) - <1 (-) 50 (-) >0.05
rs147120947 chr20:2817286 PCED1A C - 10 T vs. C - - >1 (-) 0 (-) >0.05
rs4815541 chr20:2725678 EBF4 C - 13 T vs. C 0.342 (C) 0.4 (C) <1 (-) 1 (-) >0.05
rs148180227 chr20:2726567 EBF4 C - 8 T vs. C - - >1 (-) 0 (-) >0.05
rs6132963 chr20:2731372 EBF4 C - 12 A vs. G 0.208 (A) 0.1 (A) <1 (-) 2 (-) >0.05
rs17249425 chr20:2726599 EBF4 C - 12 A vs. G 0.217 (A) 0.108 (A) <1 (-) 5 (-) >0.05
rs4813615 chr20:2731393 EBF4 C - 13 A vs. G 0.333 (A) 0.383 (A) >1 (-) 0 (-) >0.05
rs73584035 chr20:2775098 CPXM1 C - 5 A vs. G - - <1 (-) 0 (-) >0.05
rs73083209 chr20:2809486 PCED1A [-6474bp] C - 13 T vs. G 0.208 (T) 0.242 (T) <1 (-) 0 (-) >0.05
rs2143634 chr20:2773457 CPXM1 [-1258bp] C - 13 C vs. G 0.158 (G) 0.175 (G) <1 (-) 31 (-) >0.05
rs35049689 chr20:2767655 CPXM1 [-7060bp] C - 13 T vs. G 0.183 (G) 0.367 (G) >1 (-) 26 (-) >0.05
rs6084180 chr20:2808307 TMEM239 [+7377bp] C - 13 T vs. C 0.208 (C) 0.233 (C) >1 (-) 0 (-) >0.05
rs60014511 chr20:2732934 EBF4 C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs6115694 chr20:2828926 VPS16 C - 13 A vs. G 0.075 (A) - >1 (-) 10 (-) >0.05
rs215560 chr20:2795625 TMEM239 C - 13 A vs. G 0.092 (G) 0.0 (G) >1 (-) 0 (-) >0.05
rs6084151 chr20:2733894 EBF4 C - 12 A vs. G 0.283 (A) 0.433 (A) >1 (-) 0 (-) >0.05
rs1033518 chr20:2742436 EBF4 [+1683bp] C - 12 A vs. C 0.308 (C) 0.242 (A) <1 (-) 0 (-) >0.05
rs4815544 chr20:2742407 EBF4 [+1654bp] C - 12 C vs. G 0.308 (G) 0.242 (C) <1 (-) 0 (-) >0.05
rs35969412 chr20:2751831 EBF4 [+11078bp] C - 13 T vs. C 0.183 (T) 0.25 (T) <1 (-) 0 (-) >0.05
rs62205659 chr20:2829916 VPS16 C - 13 A vs. G 0.067 (G) - <1 (-) 12 (-) >0.05
rs6138905 chr20:2828419 VPS16 C - 13 A vs. G 0.1 (G) 0.25 (G) >1 (-) 0 (-) >0.05
rs58625759 chr20:2799897 TMEM239 C - 13 A vs. C 0.233 (A) 0.275 (A) <1 (-) 0 (-) >0.05
rs117697925 chr20:2748636 EBF4 [+7883bp] C - 9 A vs. G 0.008 (G) - >1 (-) 0 (-) >0.05
rs4815546 chr20:2801409 TMEM239 [+479bp] C - 13 A vs. G 0.367 (G) 0.367 (G) >1 (-) 0 (-) >0.05
rs1005304 chr20:2735182 EBF4 C - 12 A vs. G 0.125 (A) 0.242 (A) <1 (-) 0 (-) >0.05
rs4815547 chr20:2801410 TMEM239 [+480bp] C - 13 T vs. C 0.367 (C) 0.367 (C) >1 (-) 0 (-) >0.05
rs6138883 chr20:2730870 EBF4 C - 12 C vs. G 0.458 (C) 0.5 (C) >1 (-) 0 (-) >0.05
rs62205655 chr20:2821726 PCED1A C - 7 A vs. G - - >1 (-) 4 (-) >0.05
rs117131497 chr20:2818460 PCED1A C - 3 T vs. C 0.017 (C) - <1 (-) 72 (-) >0.05
rs60988802 chr20:2827284 VPS16 C - 13 T vs. G 0.083 (T) 0.208 (T) >1 (-) 12 (-) >0.05
rs142148313 chr20:2798063 TMEM239 C - 10 C vs. G - - <1 (-) 0 (-) >0.05
rs57961984 chr20:2769858 CPXM1 [-4857bp] C - 13 A vs. C 0.175 (C) 0.367 (C) >1 (-) 29 (-) >0.05
rs76046761 chr20:2736156 EBF4 C - 10 A vs. C 0.05 (A) - >1 (-) 40 (-) >0.05
rs73584032 chr20:2773686 CPXM1 [-1029bp] C - 13 A vs. G 0.117 (G) 0.175 (G) >1 (-) 30 (-) >0.05
rs41329046 chr20:2769937 CPXM1 [-4778bp] C - 13 A vs. G 0.183 (G) 0.367 (G) >1 (-) 29 (-) >0.05
rs145575559 chr20:2754632 EBF4 [+13879bp] C - 5 T vs. G - - >1 (-) 0 (-) >0.05
rs6051397 chr20:2772654 CPXM1 [-2061bp] C - 13 T vs. C 0.175 (T) 0.367 (T) >1 (-) 29 (-) >0.05
rs6037407 chr20:2762035 CPXM1 [-12680bp] C - 12 A vs. T 0.075 (T) 0.158 (T) <1 (-) 0 (-) >0.05
rs151294935 chr20:2771098 CPXM1 [-3617bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05

Association studies for this region [+]