TMEM239, chr20:2795614-2800930 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
Meta_image?name=rs7268763

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs13043754 chr20:2783771 CPXM1 [+2488bp] C - 13 A vs. G 0.117 (G) 0.417 (G) >1 (-) 0 (-) >0.05
rs56054109 chr20:2770535 CPXM1 [-4180bp] C - 13 A vs. G 0.5 (A) 0.25 (A) >1 (-) 0 (-) >0.05
rs73083219 chr20:2818348 PCED1A C - 6 T vs. C 0.008 (T) - <1 (-) 0 (-) >0.05
rs35895982 chr20:2754627 EBF4 [+13874bp] C - 13 T vs. C 0.058 (T) 0.158 (T) <1 (-) 0 (-) >0.05
rs6138918 chr20:2837058 VPS16 C - 10 A vs. G 0.017 (G) 0.075 (G) >1 (-) 0 (-) >0.05
rs2143635 chr20:2793063 TMEM239 [-2551bp] C - 13 T vs. C 0.1 (C) 0.183 (C) >1 (-) 0 (-) >0.05
rs11699077 chr20:2829158 VPS16 C - 13 A vs. G 0.125 (G) 0.367 (G) >1 (-) 0 (-) >0.05
rs2073130 chr20:2778459 CPXM1 C - 13 A vs. G 0.092 (A) 0.225 (A) <1 (-) 0 (-) >0.05
rs2297048 chr20:2840929 VPS16 C - 10 A vs. G 0.008 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs142167213 chr20:2783873 CPXM1 [+2590bp] C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs146219204 chr20:2835301 VPS16 C - 10 A vs. G - - <1 (-) 0 (-) >0.05
rs6138913 chr20:2832136 VPS16 C - 10 T vs. C - - <1 (-) 0 (-) >0.05
rs79557945 chr20:2751855 EBF4 [+11102bp] C - 12 A vs. G 0.058 (A) - >1 (-) 0 (-) >0.05
rs6132980 chr20:2833977 VPS16 C - 10 T vs. G - - <1 (-) 0 (-) >0.05
rs6138914 chr20:2833634 VPS16 C - 10 T vs. G 0.017 (T) 0.067 (T) <1 (-) 0 (-) >0.05
rs117259301 chr20:2844429 VPS16 C - 10 A vs. G 0.008 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs11696181 chr20:2791368 TMEM239 [-4246bp] C - 13 T vs. G - - <1 (-) 0 (-) >0.05
rs13036662 chr20:2784053 CPXM1 [+2770bp] C - 13 A vs. G 0.092 (A) 0.208 (A) <1 (-) 0 (-) >0.05
rs215528 chr20:2767147 CPXM1 [-7568bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs2274671 chr20:2844911 VPS16 C - 10 T vs. C - 0.1 (T) <1 (-) 6 (-) >0.05
rs11698364 chr20:2773294 CPXM1 [-1421bp] C - 13 A vs. G 0.092 (G) 0.225 (G) >1 (-) 0 (-) >0.05
rs117154632 chr20:2768651 CPXM1 [-6064bp] C - 6 A vs. G 0.058 (G) - <1 (-) 0 (-) >0.05
rs2325974 chr20:2837592 VPS16 C - 13 T vs. C 0.375 (C) 0.325 (T) >1 (-) 19 (-) >0.05
rs6132975 chr20:2815760 PCED1A [-200bp] C - 13 C vs. G 0.35 (C) 0.442 (G) <1 (-) 0 (-) >0.05
rs1329269 chr20:2810098 PCED1A [-5862bp] C - 13 T vs. C 0.4 (T) 0.333 (C) <1 (-) 0 (-) >0.05
rs6132978 chr20:2826321 VPS16 C - 10 A vs. G 0.017 (G) 0.075 (G) >1 (-) 0 (-) >0.05
rs6132977 chr20:2825972 VPS16 C - 10 A vs. G 0.017 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs34845465 chr20:2751794 EBF4 [+11041bp] C - 13 T vs. G 0.075 (T) 0.117 (T) <1 (-) 0 (-) >0.05
rs6138908 chr20:2829967 VPS16 C - 9 A vs. G 0.008 (A) - <1 (-) 0 (-) >0.05
rs6132976 chr20:2825051 VPS16 C - 10 A vs. G 0.017 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs12625619 chr20:2796007 TMEM239 C - 13 A vs. G 0.092 (A) 0.142 (A) <1 (-) 0 (-) >0.05
rs6051377 chr20:2754356 EBF4 [+13603bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs35416652 chr20:2773077 CPXM1 [-1638bp] C - 13 T vs. C 0.083 (C) 0.225 (C) >1 (-) 0 (-) >0.05
rs6138907 chr20:2829217 VPS16 C - 10 A vs. G 0.017 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs6132981 chr20:2843801 VPS16 C - 10 A vs. G 0.008 (A) 0.075 (A) <1 (-) 11 (-) >0.05
rs6037406 chr20:2760842 CPXM1 [-13873bp] C - 13 C vs. G 0.075 (C) 0.158 (C) <1 (-) 0 (-) >0.05
rs6051385 chr20:2760954 CPXM1 [-13761bp] C - 13 A vs. T 0.075 (A) 0.167 (A) <1 (-) 0 (-) >0.05
rs6115666 chr20:2759467 CPXM1 [-15248bp] C - 13 T vs. G 0.075 (G) 0.158 (G) >1 (-) 0 (-) >0.05
rs17250290 chr20:2761707 CPXM1 [-13008bp] C - 13 T vs. C 0.075 (C) 0.158 (C) >1 (-) 0 (-) >0.05
rs6051387 chr20:2761098 CPXM1 [-13617bp] C - 13 T vs. C 0.075 (T) 0.158 (T) <1 (-) 0 (-) >0.05
rs6115668 chr20:2761764 CPXM1 [-12951bp] C - 13 A vs. G 0.075 (G) 0.158 (G) >1 (-) 0 (-) >0.05
rs6037408 chr20:2762078 CPXM1 [-12637bp] C - 13 A vs. G 0.075 (G) 0.158 (G) >1 (-) 0 (-) >0.05
rs215534 chr20:2769072 CPXM1 [-5643bp] C - 13 A vs. G 0.433 (G) 0.283 (A) >1 (-) 0 (-) >0.05
rs114785756 chr20:2825807 VPS16 C - 8 C vs. G 0.017 (C) 0.075 (C) <1 (-) 0 (-) >0.05
rs6051386 chr20:2761010 CPXM1 [-13705bp] C - 13 T vs. C 0.075 (C) 0.158 (C) >1 (-) 0 (-) >0.05
rs6115667 chr20:2761240 CPXM1 [-13475bp] C - 13 A vs. G 0.075 (A) 0.158 (A) <1 (-) 0 (-) >0.05
rs215529 chr20:2767620 CPXM1 [-7095bp] C - 13 T vs. C 0.442 (T) 0.283 (C) <1 (-) 1 (-) >0.05
rs117709906 chr20:2834086 VPS16 C - 10 A vs. G - 0.075 (G) >1 (-) 3 (-) >0.05
rs12625511 chr20:2768094 CPXM1 [-6621bp] C - 13 T vs. C 0.083 (C) 0.225 (C) >1 (-) 0 (-) >0.05
rs6037402 chr20:2757862 CPXM1 [-16853bp] C - 13 A vs. G 0.058 (G) 0.158 (G) >1 (-) 0 (-) >0.05

Association studies for this region [+]