TMEM239, chr20:2795614-2800930 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
Meta_image?name=rs7268763

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6037403 chr20:2757864 CPXM1 [-16851bp] C - 13 A vs. C 0.058 (A) 0.158 (A) <1 (-) 0 (-) >0.05
rs1555667 chr20:2847384 PTPRA C - 9 T vs. C 0.008 (T) 0.067 (T) <1 (-) 0 (-) >0.05
rs13038415 chr20:2768709 CPXM1 [-6006bp] C - 13 T vs. C 0.083 (T) 0.208 (T) <1 (-) 0 (-) >0.05
rs67630216 chr20:2769931 CPXM1 [-4784bp] C - 13 T vs. C 0.075 (C) 0.225 (C) >1 (-) 0 (-) >0.05
rs2073127 chr20:2796133 TMEM239 C - 13 A vs. G 0.283 (A) 0.325 (A) <1 (-) 0 (-) >0.05
rs111930026 chr20:2754511 EBF4 [+13758bp] C - 13 A vs. G 0.292 (G) - >1 (-) 0 (-) >0.05
rs8123040 chr20:2792926 TMEM239 [-2688bp] C - 7 A vs. C 0.017 (C) 0.2 (C) >1 (-) 0 (-) >0.05
rs11697717 chr20:2771921 CPXM1 [-2794bp] C - 13 T vs. C 0.075 (C) 0.225 (C) >1 (-) 0 (-) >0.05
rs1555668 chr20:2847377 VPS16 C - 10 T vs. C 0.008 (T) 0.092 (T) <1 (-) 0 (-) >0.05
rs13038857 chr20:2768688 CPXM1 [-6027bp] C - 13 A vs. C 0.283 (C) 0.408 (A) >1 (-) 0 (-) >0.05
rs112715178 chr20:2817499 PCED1A C - 9 A vs. G 0.025 (G) - >1 (-) 40 (-) >0.05
rs6037395 chr20:2747732 EBF4 [+6979bp] C - 13 A vs. G - - >1 (-) 8 (-) >0.05
rs8116097 chr20:2792802 TMEM239 [-2812bp] C - 7 A vs. G 0.017 (A) 0.208 (A) <1 (-) 0 (-) >0.05
rs6107192 chr20:2751612 EBF4 [+10859bp] C - 13 A vs. G 0.425 (A) 0.317 (G) <1 (-) 1 (-) >0.05
rs6115663 chr20:2749639 EBF4 [+8886bp] C - 13 T vs. C 0.433 (C) - >1 (-) 4 (-) >0.05
rs215561 chr20:2797015 TMEM239 C - 13 A vs. G 0.408 (G) 0.392 (A) >1 (-) 0 (-) >0.05
rs117420856 chr20:2747991 EBF4 [+7238bp] C - 7 T vs. G 0.008 (T) - >1 (-) 0 (-) >0.05
rs146720554 chr20:2831182 VPS16 C - 13 A vs. G - - >1 (-) 22 (-) >0.05
rs6138903 chr20:2813650 PCED1A [-2310bp] C - 8 A vs. G 0.008 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs6138902 chr20:2813527 PCED1A [-2433bp] C - 8 A vs. C - 0.075 (A) <1 (-) 0 (-) >0.05
rs6051395 chr20:2769650 CPXM1 [-5065bp] C - 13 A vs. T 0.25 (A) 0.408 (T) <1 (-) 0 (-) >0.05
rs140364159 chr20:2783872 CPXM1 [+2589bp] C - 7 A vs. G - - >1 (-) 0 (-) >0.05
rs61325320 chr20:2792425 TMEM239 [-3189bp] C - 8 T vs. C - - <1 (-) 0 (-) >0.05
rs8122994 chr20:2792874 TMEM239 [-2740bp] C - 8 A vs. G 0.017 (G) 0.183 (G) >1 (-) 0 (-) >0.05
rs150407681 chr20:2831976 VPS16 C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs6084154 chr20:2746354 EBF4 [+5601bp] C - 13 A vs. G 0.183 (A) 0.45 (A) <1 (-) 8 (-) >0.05
rs6051374 chr20:2751708 EBF4 [+10955bp] C - 13 A vs. G 0.233 (G) 0.425 (G) >1 (-) 0 (-) >0.05
rs77470526 chr20:2786670 CPXM1 [+5387bp] C - 13 T vs. C - 0.183 (T) <1 (-) 0 (-) >0.05
rs75480902 chr20:2784420 CPXM1 [+3137bp] C - 13 A vs. C - 0.183 (A) <1 (-) 0 (-) >0.05
rs35646473 chr20:2786987 CPXM1 [+5704bp] C - 13 A vs. C - 0.183 (A) <1 (-) 0 (-) >0.05
rs215536 chr20:2772495 CPXM1 [-2220bp] C - 13 T vs. G 0.475 (G) 0.183 (T) >1 (-) 0 (-) >0.05
rs12625050 chr20:2788626 TMEM239 [-6988bp] C - 13 T vs. C - 0.175 (T) <1 (-) 0 (-) >0.05
rs10211786 chr20:2808664 PCED1A [-7296bp] C - 13 A vs. C 0.117 (A) - <1 (-) 0 (-) >0.05
rs6115681 chr20:2792930 TMEM239 [-2684bp] C - 13 A vs. G 0.283 (A) 0.233 (A) <1 (-) 0 (-) >0.05
rs6051420 chr20:2808662 PCED1A [-7298bp] C - 13 T vs. C 0.117 (T) - <1 (-) 0 (-) >0.05
rs141588433 chr20:2794638 TMEM239 [-976bp] C - 5 T vs. G - - <1 (-) 0 (-) >0.05
rs117880287 chr20:2763401 CPXM1 [-11314bp] C - 3 T vs. G 0.008 (G) - <1 (-) 51 (-) >0.05
rs6051423 chr20:2815231 PCED1A [-729bp] C - 13 A vs. G 0.117 (A) 0.217 (A) <1 (-) 0 (-) >0.05
rs144347729 chr20:2753960 EBF4 [+13207bp] C - 13 T vs. G - - >1 (-) 0 (-) >0.05
rs111273656 chr20:2790896 TMEM239 [-4718bp] C - 13 T vs. G - - <1 (-) 0 (-) >0.05
rs6138901 chr20:2809555 PCED1A [-6405bp] C - 7 T vs. C - 0.083 (C) >1 (-) 7 (-) >0.05
rs12106003 chr20:2791484 TMEM239 [-4130bp] C - 8 T vs. C - - <1 (-) 0 (-) >0.05
rs7260992 chr20:2791581 TMEM239 [-4033bp] C - 8 A vs. G - - <1 (-) 0 (-) >0.05
rs12106184 chr20:2791481 TMEM239 [-4133bp] C - 8 T vs. C - - >1 (-) 0 (-) >0.05
rs4813618 chr20:2809123 PCED1A [-6837bp] C - 13 C vs. G 0.117 (C) 0.208 (C) <1 (-) 0 (-) >0.05
rs6138893 chr20:2758094 CPXM1 [-16621bp] C - 13 T vs. G - - >1 (-) 11 (-) >0.05
rs11698079 chr20:2757335 EBF4 [+16582bp] C - 13 A vs. G - - >1 (-) 9 (-) >0.05
rs112419247 chr20:2790827 TMEM239 [-4787bp] C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs6051413 chr20:2791244 TMEM239 [-4370bp] C - 11 C vs. G - 0.158 (G) >1 (-) 0 (-) >0.05
rs6051421 chr20:2812820 PCED1A [-3140bp] C - 13 A vs. G 0.117 (G) 0.208 (G) >1 (-) 0 (-) >0.05

Association studies for this region [+]