TMEM239, chr20:2795614-2800930 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
Meta_image?name=rs7268763

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs4815546 chr20:2801409 TMEM239 [+479bp] C - 13 A vs. G 0.367 (G) 0.367 (G) >1 (-) 0 (-) >0.05
rs4815547 chr20:2801410 TMEM239 [+480bp] C - 13 T vs. C 0.367 (C) 0.367 (C) >1 (-) 0 (-) >0.05
rs79132121 chr20:2833658 VPS16 C - 13 A vs. G 0.033 (A) - <1 (-) 20 (-) >0.05
rs62207161 chr20:2838175 VPS16 C - 13 T vs. C - - >1 (-) 15 (-) >0.05
rs555502 chr20:2846397 VPS16 C - 13 A vs. G 0.233 (A) 0.433 (A) <1 (-) 0 (-) >0.05
rs2325977 chr20:2838118 VPS16 C - 13 T vs. C 0.083 (T) 0.208 (T) >1 (-) 15 (-) >0.05
rs62205655 chr20:2821726 PCED1A C - 7 A vs. G - - >1 (-) 4 (-) >0.05
rs6051448 chr20:2838313 VPS16 C - 13 A vs. G - - <1 (-) 16 (-) >0.05
rs117131497 chr20:2818460 PCED1A C - 3 T vs. C 0.017 (C) - <1 (-) 72 (-) >0.05
rs60988802 chr20:2827284 VPS16 C - 13 T vs. G 0.083 (T) 0.208 (T) >1 (-) 12 (-) >0.05
rs142148313 chr20:2798063 TMEM239 C - 10 C vs. G - - <1 (-) 0 (-) >0.05
rs57961984 chr20:2769858 CPXM1 [-4857bp] C - 13 A vs. C 0.175 (C) 0.367 (C) >1 (-) 29 (-) >0.05
rs73584032 chr20:2773686 CPXM1 [-1029bp] C - 13 A vs. G 0.117 (G) 0.175 (G) >1 (-) 30 (-) >0.05
rs112081527 chr20:2844226 VPS16 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs41329046 chr20:2769937 CPXM1 [-4778bp] C - 13 A vs. G 0.183 (G) 0.367 (G) >1 (-) 29 (-) >0.05
rs3818605 chr20:2840773 VPS16 C - 13 T vs. C 0.142 (T) 0.208 (T) <1 (-) 0 (-) >0.05
rs145575559 chr20:2754632 EBF4 [+13879bp] C - 5 T vs. G - - >1 (-) 0 (-) >0.05
rs6051397 chr20:2772654 CPXM1 [-2061bp] C - 13 T vs. C 0.175 (T) 0.367 (T) >1 (-) 29 (-) >0.05
rs6037407 chr20:2762035 CPXM1 [-12680bp] C - 12 A vs. T 0.075 (T) 0.158 (T) <1 (-) 0 (-) >0.05
rs2325973 chr20:2835014 VPS16 C - 13 A vs. G 0.083 (G) 0.208 (G) <1 (-) 11 (-) >0.05
rs6084185 chr20:2838212 VPS16 C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs151294935 chr20:2771098 CPXM1 [-3617bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05

Association studies for this region [+]