Study: Nalls, 2014

Population Ethnicity Diagnosis Source # Cases (% women) # Controls (% women) AAO (sd) AAO range AAE (sd) AAE range Ctrl age (sd) Ctrl age range # Polymorphisms
Iceland (IPDGC-deCODE) C UKPDSBB CL 604 (48%) 4916 (57%) 62 (12) - - - 80 (8) - 9,406

Polymorphisms in this population [-]

Polymorphism Location (hg19) Gene Allele contrast Ethnicity # Studies # Samples 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs11653864 chr17:40782320 TUBG1 [+15068bp] G vs. T All: C 15 108,990 - - 0.92 (0.89-0.95) 39 (0-67) 4.20e-06
rs11654144 chr17:40782389 TUBG1 [+15137bp] C vs. T All: C 15 108,990 - - 0.90 (0.86-0.94) 21 (0-57) 3.41e-06
rs6503715 chr17:40788744 TUBG1 [+21492bp] C vs. T All: C 15 108,990 - - 0.92 (0.89-0.95) 40 (0-67) 5.42e-06
rs62078395 chr17:40789841 TUBG2 [-21482bp] G vs. A All: C 15 108,990 - - 0.92 (0.89-0.95) 40 (0-67) 5.44e-06
rs12952407 chr17:40791178 TUBG2 [-20145bp] T vs. C All: C 15 108,990 0.233 (T) 0.033 (T) 1.09 (1.05-1.13) 40 (0-67) 2.91e-06
rs2090415 chr17:40793335 TUBG2 [-17988bp] C vs. A All: C 15 108,990 - - 0.92 (0.88-0.95) 38 (0-67) 3.58e-06
rs11654121 chr17:40797461 TUBG2 [-13862bp] C vs. T All: C 15 108,990 0.233 (C) - 1.09 (1.05-1.13) 38 (0-66) 3.57e-06
rs35733365 chr17:40809784 TUBG2 [-1539bp] C vs. T All: C 15 108,990 0.333 (C) 0.392 (C) 0.93 (0.90-0.97) 0 (0-52) 1.79e-04
rs9897504 chr17:40816767 TUBG2 T vs. C All: C 15 108,990 0.242 (T) - 1.10 (1.05-1.14) 33 (0-64) 4.08e-06
rs2292749 chr17:40818584 TUBG2 T vs. C All: C 15 108,990 0.333 (T) 0.383 (T) 0.93 (0.89-0.96) 7 (0-57) 7.97e-05
rs5848 chr17:42430244 GRN T vs. C All: C 14 105,041 0.192 (T) 0.225 (T) 1.10 (1.05-1.15) 0 (0-47) 9.24e-06
rs850738 chr17:42434630 FAM171A2 A vs. G All: C 14 105,041 - - 0.92 (0.89-0.96) 0 (0-39) 7.00e-06
rs708384 chr17:42437682 FAM171A2 A vs. C All: C 14 105,041 0.333 (A) 0.292 (A) 1.07 (1.04-1.11) 0 (0-39) 1.42e-05
rs708383 chr17:42437754 FAM171A2 A vs. G All: C 14 105,041 0.333 (A) 0.3 (A) 1.07 (1.04-1.11) 0 (0-39) 1.35e-05
rs708382 chr17:42442344 FAM171A2 [+1101bp] C vs. T All: C 14 105,041 0.375 (C) 0.358 (C) 1.08 (1.05-1.11) 0 (0-39) 3.07e-06
rs850737 chr17:42443784 FAM171A2 [+2541bp] C vs. T All: C 13 103,437 0.375 (C) 0.358 (C) 1.08 (1.05-1.12) 0 (0-44) 3.41e-06
rs5910 chr17:42449789 ITGA2B A vs. G All: C 14 105,041 0.333 (A) 0.35 (A) 1.08 (1.05-1.12) 0 (0-44) 2.51e-06
rs850733 chr17:42451305 ITGA2B G vs. A All: C 14 105,041 - - 0.92 (0.89-0.95) 0 (0-42) 3.00e-06
rs5911 chr17:42453065 ITGA2B C vs. A All: C 14 105,041 0.333 (C) 0.358 (C) 1.08 (1.05-1.12) 0 (0-41) 2.69e-06
rs850732 chr17:42454243 ITGA2B C vs. T All: C 14 105,041 - - 0.92 (0.89-0.95) 0 (0-42) 2.33e-06
rs850731 chr17:42454270 ITGA2B T vs. C All: C 15 108,990 - 0.358 (C) 0.93 (0.90-0.97) 0 (0-46) 6.30e-05
rs850729 chr17:42454806 ITGA2B C vs. T All: C 14 105,041 - - 0.92 (0.89-0.95) 0 (0-41) 2.49e-06
rs17544947 chr17:42918966 HIGD1B [-4755bp] G vs. T All: C 15 108,990 0.242 (G) - 1.08 (1.04-1.11) 0 (-) 7.83e-05
rs73984100 chr17:42929985 EFTUD2 T vs. G All: C 15 108,990 0.267 (T) - 1.08 (1.04-1.12) 0 (-) 4.58e-05
rs75193889 chr17:43060768 C1QL1 [+15329bp] G vs. T All: C 15 108,990 0.033 (G) - 0.81 (0.75-0.87) 0 (0-42) 5.85e-08
rs4986167 chr17:43202492 PLCD3 G vs. A All: C 15 108,990 - - 0.99 (0.95-1.02) 27 (0-61) 0.409
rs77403959 chr17:43208068 PLCD3 T vs. C All: C 15 108,990 0.042 (T) - 0.82 (0.75-0.89) 0 (0-43) 2.92e-06
rs1053578 chr17:43221285 ACBD4 C vs. T All: C 15 108,990 0.042 (C) - 0.81 (0.75-0.89) 0 (0-47) 1.90e-06
rs7222094 chr17:43367653 SPATA32 [+28174bp] C vs. T All: C 15 108,990 0.408 (C) 0.117 (T) 0.94 (0.91-0.97) 0 (0-46) 4.90e-05
rs721579 chr17:43370481 SPATA32 [+31002bp] T vs. C All: C 15 108,990 0.225 (T) 0.392 (C) 0.90 (0.86-0.93) 0 (0-41) 3.11e-09
rs2867316 chr17:43376447 RNA5SP443 [-28285bp] T vs. C All: C 15 108,990 0.275 (T) 0.317 (C) 0.90 (0.87-0.93) 0 (0-41) 8.29e-10
rs7221403 chr17:43380666 RNA5SP443 [-24066bp] C vs. A All: C 15 108,990 0.417 (C) - 0.93 (0.90-0.96) 0 (0-31) 4.45e-06
rs9908330 chr17:43383100 RNA5SP443 [-21632bp] G vs. A All: C 15 108,990 0.417 (G) 0.233 (A) 0.92 (0.90-0.95) 0 (0-33) 9.64e-07
rs4792847 chr17:43383484 RNA5SP443 [-21248bp] A vs. G All: C 15 108,990 0.417 (A) 0.125 (G) 0.93 (0.90-0.96) 0 (0-38) 7.71e-06
rs1476532 chr17:43383596 RNA5SP443 [-21136bp] G vs. A All: C 15 108,990 0.417 (G) 0.233 (A) 0.91 (0.88-0.94) 0 (0-40) 8.19e-08
rs7214514 chr17:43387104 RNA5SP443 [-17628bp] T vs. G All: C 15 108,990 0.275 (T) 0.317 (G) 0.90 (0.87-0.93) 0 (0-38) 1.12e-09
rs4792849 chr17:43395178 RNA5SP443 [-9554bp] A vs. G All: C 15 108,990 0.225 (A) 0.383 (G) 0.90 (0.86-0.93) 0 (0-32) 2.02e-09
rs117642368 chr17:43399058 RNA5SP443 [-5674bp] C vs. G All: C 15 108,990 0.067 (C) - 0.77 (0.73-0.82) 0 (0-47) 3.08e-16
rs4328483 chr17:43401540 RNA5SP443 [-3192bp] T vs. G All: C 15 108,990 0.367 (T) 0.342 (G) 0.92 (0.89-0.95) 0 (0-25) 3.14e-07
rs4792814 chr17:43403005 RNA5SP443 [-1727bp] T vs. C All: C 15 108,990 0.358 (T) 0.342 (C) 0.92 (0.89-0.95) 0 (0-22) 5.90e-07
rs4792850 chr17:43403777 RNA5SP443 [-955bp] A vs. C All: C 15 108,990 0.358 (A) 0.35 (C) 0.92 (0.89-0.95) 0 (0-22) 6.03e-07
rs17686238 chr17:43417273 RNA5SP443 [+12410bp] T vs. G All: C 14 103,235 0.067 (T) - 0.76 (0.71-0.81) 0 (0-52) 1.32e-17
rs10853050 chr17:43445792 ARHGAP27 [-25483bp] A vs. G All: C 14 103,235 0.242 (A) 0.383 (G) 0.90 (0.86-0.93) 18 (0-56) 2.06e-08
rs9303471 chr17:43456342 ARHGAP27 [-14933bp] A vs. C All: C 14 103,235 0.242 (A) 0.408 (C) 0.90 (0.86-0.93) 26 (0-61) 2.75e-09
rs11650773 chr17:43456676 ARHGAP27 [-14599bp] T vs. C All: C 14 103,235 0.358 (T) 0.392 (C) 0.93 (0.90-0.97) 22 (0-58) 4.28e-05
rs61572747 chr17:43460891 ARHGAP27 [-10384bp] G vs. A All: C 14 103,235 0.2 (G) 0.058 (G) 0.82 (0.78-0.85) 28 (0-62) 3.80e-19
rs8327 chr17:43472507 ARHGAP27 G vs. A All: C 13 99,286 0.242 (G) 0.367 (G) 1.12 (1.08-1.17) 0 (0-46) 3.46e-09
rs1230100 chr17:43480848 ARHGAP27 C vs. G All: C 14 103,235 0.442 (C) 0.483 (G) 0.89 (0.86-0.92) 0 (0-8) 1.81e-12
rs2102989 chr17:43492416 ARHGAP27 G vs. A All: C 14 103,235 - - 0.89 (0.86-0.92) 0 (0-3) 1.40e-12
rs1230076 chr17:43495660 ARHGAP27 C vs. T All: C 14 103,235 - - 0.88 (0.85-0.91) 0 (-) 8.67e-13